Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01377 ATGTGGCTCACTTCAGTCTTTTTAGTGGTGGAGCTTCGAGCTTCGAGCTTTGAAGGTTTGGCTCCAATGGCGAGGCCGGTTCAGATTGAAGTGTGGAATCCGAATGGAAAGTATAGAGTTGTTAGCACTAAGGCTATGCCTGGAACTCGATGGATCAATCTCTTGATCGAGCAAGATTGCCGAGTCGAGATTTGTACCGAGAAGAAGACGATACTCTCAGTAGAGGATATCGTTTCTCTCATCGGCAATAGGTGCGACGGCGTTATTGGACAGTTGACTGAAGATTGGGGAGAGGTGCTGTTTTCTGCACTAAGCAGAGCGGGAGGCAAAGCTTTTAGTAATATGGCTGTTGGTTACAATAATGTAGATGTTAATGCTGCTAATAAGTATGGTATTGCTGTAGGAAACACTCCTGGAGTACTTACAGAAACCACAGCAGAGTTGGCAGCTTCACTTTCTCTTGCAGCTGCAAGAAGGATAGTTGAAGCTGATGAGTTCATGAGGGCAGGCCGCTATGATGGATGGCTTCCCAATTTGTTTGTTGGAAACTTGCTGAAAGGACAGACTGTTGGTGTGATTGGAGCTGGTCGTATTGGATCTGCTTATGCAAGAATGATGGTAGAAGGGTTTAAGATGAACCTGATATACTTTGATCTTTACCAGTCAACCAGACTTGAAAAGTTTGTTACAGCCTATGGTGAGTTCCTGAAAGCCAATGGCGAGGCTCCCGTGACATGGAGAAGAGCATCATCCATGGAAGAGGTGCTTCGAGAGGCTGATGTGATAAGTCTTCATCCAGTACTGGATAAAACCACCTTCCATCTGGTGAACAAAGAAAGTCTTAAAGCCATGAAGAAGGATGCAATCCTCATTAACTGCAGTCGAGGACCTGTGATCGATGAAGCTGCCCTTGTCGAGCATTTAAGAGAGAATCCGATGTTTCGAGTTGGCCTTGATGTCTTTGAGGATGAACCATACATGAAACCTGGGCTAGCTGATATGAAAAATGCCATCATTGTTCCTCACATTGCTTCCGCTTCCAAGTGGACTCGTGAAGGAATGGCGACACTGGCTGCTCTTAATGTCCTGGGAAAGATTAAAGATTATCCCGTTTGGTCCGATCCAAACCGAGTAGAACCTTTCCTCAACGAGAACGTTCCGCCTCCAGCTGCATCTCCGAGCATTGTGAACGCGAAAGCCTTGGGATTGCCTGTTTCAAAGTTGTGA 1227 45.97 MWLTSVFLVVELRASSFEGLAPMARPVQIEVWNPNGKYRVVSTKAMPGTRWINLLIEQDCRVEICTEKKTILSVEDIVSLIGNRCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMEEVLREADVISLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVEHLRENPMFRVGLDVFEDEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKDYPVWSDPNRVEPFLNENVPPPAASPSIVNAKALGLPVSKL 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9091077 9093936 - CmaCh11G013770.1 Cma11g01377 303886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01377 408 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 50 369 - -
Cma11g01377 408 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 152 344 IPR006140 GO:0051287
Cma11g01377 408 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 53 363 IPR006139 GO:0016616|GO:0051287
Cma11g01377 408 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 190 218 IPR029752 -
Cma11g01377 408 Gene3D - 41 367 - -
Cma11g01377 408 PANTHER ZGC:136493 50 369 - -
Cma11g01377 408 Gene3D - 140 343 - -
Cma11g01377 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 142 345 IPR036291 -
Cma11g01377 408 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 57 178 - -
Cma11g01377 408 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 284 300 IPR029753 -
Cma11g01377 408 CDD GDH 38 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01377 K15893 HPR1; glycerate dehydrogenase [EC:1.1.1.29] - csv:101209132 719.924
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01377 Cma19g00743 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01377 Cma-Chr11:9091077 Cma17g00795 Cma-Chr17:6305071 1.79E-38 dispersed
Cma11g01377 Cma-Chr11:9091077 Cma19g00743 Cma-Chr19:7418862 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g171 . . . . . . . . Cmo19g00752 . . . . . . . Cpe15g00597 . . . . . . . . . . . . . . . Cone8ag1289 . . . Csa07g00106 . . . . . . . . . . . . . Cma11g01377 Cma19g00743 . Car19g00572 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010312 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01377 Cma_Chr11 FPKM 10.38275 7.508313 64.391548 62.974773 144.590942 153.523407 142.889771 13.912186 16.28233 13.825224