Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01381 ATGGCGGGAGAACAGAACGGCGGTGTCGATGAGGTGATGGAGGAATTCGCCATCTGGAAGAAGAATTCTCCCTATCTGTATGATCTTCTCATTTCCCACTCTCTGGAGTGGCCGTCTCTCACCGTTGATTGGGTGCCATTGGCTCCATTTCCTCACCCAGCCAATTCTTCTCTCGCTGTCCACAAGCTCGTTCTTGGAACTCACACTTCGGAGGATGTCCCCAACTTTCTCATGGTGGCCGATGTAATTTTACCTGTCAAAGCATCCGAAACTAGAATCGACATTACTGGGGAAAACCCCATCATGCCGGAGGTAGAGATAACCCAGAAGATACGTGTTGATGGAGAGGTGAACAGAGCGCGATGCATGCCGCAGAACCCAGAAATTGTTGGGGCAAAAACGAGTGGCTGTGAGGTGTATGTTTTTAATTGTGCTAAACAGGGGGCGAAGGCTCAGGGAGGTGAGTGCGATCCTGATTTGAGATTGAGGGGTCATGATAAAGAGGGTTATGGGTTGTCTTGGAGCCCGTTTAAGGAGGGTTACCTCTTAAGTGGCTCAAATGATCAGAAAATCTGTTTGTGGGACGTGTCTTCCATGGCTGACAAGAACGTTCTTGATGCAATGAACGTCTATGAGGCTCATGAAAGTGTGGTCGGTGATGTGTCATGGCATTTGAAGAATGAGAACTTGTTTGGATCTGTAGGCGATGATTGCTTGTTGGTGATATGGGATTTGCGCACAAATAAATCTGTGGATTCTGTTCGAGCTCACGAGGAGGAGGTGAACTATGTTTCTTTCAATCCATATAACGAATGGATTTTAGCAACAGCATCATCAGATACCACCGTGGGTCTCTTCGATCTACGAAAGCTTGCCGAACCACTCCACGTTCTTAGCAGCCACACGGAGGGAGTGTATGAGGTGGAGTGGGATCCAAATCACGAAACTGTATTAGCATCTTCTGGTGATGATAGAAGGTTGATGGTATGGGATCTCAACAACATGGGAAACGAGCAAGATGGGGATGCTGAAGATGGGCCTCCAGAGCTGCTGTTTTCACACGGAGGCCACAAGGCTAAAATCTCTGACTTCTCCTGGAACGCCCACCAGCCTTGGGTTATAGCAAGCGTCGCTGAAGACAACTCTGTTCAGGTCTGGCAAATGGCCAAAGGAACTGGAGTGTTCCATAGGAAGAAGCTTCGCCATTTCAAGTACCTACCTCAGATGGGTCGAGAGATGATAATCAAATGTTGCAGTTGCGCAACAATACACTTGTTGATTGAGGTATGCACCACCCCGCAGGCATTGACTGGATGA 1317 48.22 MAGEQNGGVDEVMEEFAIWKKNSPYLYDLLISHSLEWPSLTVDWVPLAPFPHPANSSLAVHKLVLGTHTSEDVPNFLMVADVILPVKASETRIDITGENPIMPEVEITQKIRVDGEVNRARCMPQNPEIVGAKTSGCEVYVFNCAKQGAKAQGGECDPDLRLRGHDKEGYGLSWSPFKEGYLLSGSNDQKICLWDVSSMADKNVLDAMNVYEAHESVVGDVSWHLKNENLFGSVGDDCLLVIWDLRTNKSVDSVRAHEEEVNYVSFNPYNEWILATASSDTTVGLFDLRKLAEPLHVLSSHTEGVYEVEWDPNHETVLASSGDDRRLMVWDLNNMGNEQDGDAEDGPPELLFSHGGHKAKISDFSWNAHQPWVIASVAEDNSVQVWQMAKGTGVFHRKKLRHFKYLPQMGREMIIKCCSCATIHLLIEVCTTPQALTG 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9114680 9117803 + CmaCh11G013810.1 Cma11g01381 303890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01381 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 334 IPR001680 GO:0005515
Cma11g01381 438 Gene3D - 4 397 IPR015943 GO:0005515
Cma11g01381 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 334 - -
Cma11g01381 438 PRINTS G protein beta WD-40 repeat signature 182 196 IPR020472 -
Cma11g01381 438 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Cma11g01381 438 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Cma11g01381 438 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 4 391 - -
Cma11g01381 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 289 IPR001680 GO:0005515
Cma11g01381 438 SMART WD40_4 155 195 IPR001680 GO:0005515
Cma11g01381 438 SMART WD40_4 291 331 IPR001680 GO:0005515
Cma11g01381 438 SMART WD40_4 247 287 IPR001680 GO:0005515
Cma11g01381 438 SMART WD40_4 204 244 IPR001680 GO:0005515
Cma11g01381 438 SMART WD40_4 347 387 IPR001680 GO:0005515
Cma11g01381 438 PANTHER WD40 REPEAT FAMILY 4 391 - -
Cma11g01381 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 396 IPR001680 GO:0005515
Cma11g01381 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 204 IPR001680 GO:0005515
Cma11g01381 438 Pfam WD domain, G-beta repeat 293 331 IPR001680 GO:0005515
Cma11g01381 438 Pfam WD domain, G-beta repeat 351 386 IPR001680 GO:0005515
Cma11g01381 438 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Cma11g01381 438 ProSitePatterns Trp-Asp (WD) repeats signature. 182 196 IPR019775 -
Cma11g01381 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 253 IPR001680 GO:0005515
Cma11g01381 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 162 198 - -
Cma11g01381 438 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Cma11g01381 438 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 14 85 IPR022052 -
Cma11g01381 438 SUPERFAMILY WD40 repeat-like 110 394 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01381 K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4 - csv:101207920 749.199
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01381 Cma19g00739 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00243 Cma-Chr1:1109611 Cma11g01381 Cma-Chr11:9114680 1.66E-06 dispersed
Cma06g01217 Cma-Chr6:8112331 Cma11g01381 Cma-Chr11:9114680 2.16E-150 dispersed
Cma07g00185 Cma-Chr7:883201 Cma11g01381 Cma-Chr11:9114680 1.79E-09 dispersed
Cma11g00687 Cma-Chr11:3335748 Cma11g01381 Cma-Chr11:9114680 1.54E-32 dispersed
Cma11g01381 Cma-Chr11:9114680 Cma14g01945 Cma-Chr14:13693374 2.74E-144 dispersed
Cma14g00982 Cma-Chr14:5145819 Cma11g01381 Cma-Chr11:9114680 2.49E-12 dispersed
Cma20g00236 Cma-Chr20:1128514 Cma11g01381 Cma-Chr11:9114680 1.99E-13 dispersed
Cma11g01381 Cma-Chr11:9114680 Cma19g00739 Cma-Chr19:7390991 1.70E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g163 . . . . . . . . Cmo19g00748 Cmo11g01740 . . . . Sed06g0381 Cpe04g00592 . Bhi05g01715 Tan02g0682 Cmetu01g1199 . Hepe02g0425 . . Cla02g00427 Cam02g0436 Cec02g0434 Cco02g0452 Clacu02g0437 Cmu02g0432 Cre02g0766 Cone12ag1232 . . . . Csa07g00100 . Cme01g01262 Blo04g00567 . . . Bpe15g00813 . Bma03g00609 . . . . Cma11g01381 Cma19g00739 . Car19g00568 . . . . . . . . . . . . . . . . Lsi11g01200 . Chy01g00681 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010062 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01381 Cma_Chr11 FPKM 11.236705 12.672407 11.148636 11.741508 31.652922 35.556263 33.709316 7.785683 7.73019 6.888307