Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01382 ATGGACGACGGGGAGATTGATTTTTCGAATCAAGAAGTGTTTTCGAACCCTAATATGGCGATTCCAAGCAGTTGCTCAATGGATAGTTTCTTTGATGATCTTCTCAAAGACGTTCATACTTGTACTCATACTCATACTTGCATTCCACCGGGCCCTGATTACTCTCATACCCACACCTGTTTCCATGTCCACACTAAAATTCTCCCTGCCTCACCTGAAGAAGACAAGGTTGTTACTGATGATACTGCGGAATCGACTGAAAAGAAGTCGAAGAAACGCCCGTTGGGTAACCAGGAAGCTGTTCGTAAGTATCGTGAGAAGAAGAAGGCTAGGGCAGCCTCATTAGAGGATGAGGTTGTTAGATTGAGGGCTTTGAATCAGCATTTGATGAAGAGGTTGCAAGGGCAGGCAGCGTTGGAGGCTGAGATTACTCGGCTCAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGTTCGTTTCCTTATCAGAAAACTGGTAATCCCAACCTGTCCAACACAAGCAACCCTGGTGCTTATGTGATGAACCCATGTAATATGCAGTGTGATGATCAGGTTTACTGCCTTCATCCTGAGGGTAATGGAAGTAGAAGTGGTGAAGGTGCTGTGATAAATGAACAGAGTTTTGGTGCTTGTGGATTTGAAAATCTTCAGTGTTTGGCGAATCATGACTCGGGATCGAAAGAGCTACTTGGGGACGGGATGGGGAATGCTGTTTCAAATGATATTTCTTCTGGAGTGACAAAGAGAAAAGGACAACGTAAAGAGACGTGGACCCGATGA 813 45.02 MDDGEIDFSNQEVFSNPNMAIPSSCSMDSFFDDLLKDVHTCTHTHTCIPPGPDYSHTHTCFHVHTKILPASPEEDKVVTDDTAESTEKKSKKRPLGNQEAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEITRLKCLLVDIRGRIEGEIGSFPYQKTGNPNLSNTSNPGAYVMNPCNMQCDDQVYCLHPEGNGSRSGEGAVINEQSFGACGFENLQCLANHDSGSKELLGDGMGNAVSNDISSGVTKRKGQRKETWTR 270
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 9117381 9119774 - CmaCh11G013820.1 Cma11g01382 303891
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01382 270 MobiDBLite consensus disorder prediction 249 270 - -
Cma11g01382 270 PANTHER BASIC LEUCINE ZIPPER 23 1 241 - -
Cma11g01382 270 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
Cma11g01382 270 Coils Coil 105 132 - -
Cma11g01382 270 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Cma11g01382 270 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 241 - -
Cma11g01382 270 Pfam Basic region leucine zipper 86 142 IPR004827 GO:0003700|GO:0006355
Cma11g01382 270 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Cma11g01382 270 CDD bZIP 91 143 - -
Cma11g01382 270 Gene3D - 75 153 - -
Cma11g01382 270 MobiDBLite consensus disorder prediction 72 102 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma11g01382 Cma20g00750 CCT
Cma02g00259 Cma11g01382 CCT
Cma11g01382 Cma19g00738 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01382 Cma-Chr11:9117381 Cma19g00738 Cma-Chr19:7389350 3.50E-154 wgd
Cma11g01382 Cma-Chr11:9117381 Cma02g00259 Cma-Chr2:1176817 2.21E-129 wgd
Cma11g01382 Cma-Chr11:9117381 Cma20g00750 Cma-Chr20:3517913 9.57E-123 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35887 PF07716 bZIP_2 9.50E-13 CL0018 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01382 K25785 - csv:101208161 461.455