Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01385 ATGGAAAATGGGGTTGAGATTGTTGATGCTTTGCACCATGGAGAGACTAAATTTGTGGAAGATGGTGTAGATGAAAGAGTTGTAGTTGGTTCTTGTGAATCTAAGGTTACTGAAAAGGAAGATGGGAAAGAGCATTTGATTGAGCAGAGTTCAAAATATGGTTCTGTGAATGGAGATGTTGCTGAAGAAGAAGTCTATGGTTTTGAATCTGGATTAATTTCTGATCATCTTAATGGTGCCCGCGATGAAGATAAGTTTGAAGAGGCGATACAGGCTTCTCGTGGAGTGAATGAAAACACGGCGGTGGAGCAAGATGTGATTTCGGGAAAGGAGAAGGAGGACTTGGGTGGTAATTTGGTTGACAATGTAGCTGTGGCTACTAAAGTTGATGAGAGAGGAATTGAAGAGGAAGCAGTGAGTTCGGATTTGAATGAGTTGAATTTTAGTAGAGATGATTTAGGAAAGGAAACATCGGATAACGGTGCTAGCCCAGAGGTTGGAGTGTTGAAGGGTGAGGATTGGGATGATCCGAAATTTGGTTCTATGAGTATGAAGTCTGAAAAGGAAGACAACTTGGTGAATAAGACTGCTGATATGGTAGAGGGTACGAAGCTGGATTCTACTAGCAAGATTCGTACTGAAAATGGCAATGGTGTGGAATTGAAGAAGAAGAGATTAGGTATGGAGTCGACAGACCATGATGAGAAGACCGACGAGCCGTTAAATGCACCTGCTGTCCTTGATTTGGACTATCAAGATAATATGAATGGTGAGCTAAAGGATGATTCTCCTAATGCAGATCTAGAACTGCCGGGCCATGGGAATGAAGAAATGAAAAAGGCTTCAGCTGGTATCGATTTGAACGAGGATAATAACGATGAAGAAAGCTCTTCGATGTGCATGACTACCACGAATCAGGATCACAGGATTGAGGAAGTGAAAGATGCTTCTACTGGGAAAGACTCAGACGAGCAGTCTGCAGAATCTTGTGAATTGAATGGTACTACGTCTGTCGATGAACATAAACCTGTGTGTGAAATTAAAATTTCGATGGAGACGGTTAAGGATATCTCGGCCTCTGAGAAGATAGCTGATGAGAAAATTGAGAAGATACAGGGCGGTGAAAGTGATATGACTGTGAAGGAAAACATTATGTCTGGACGTCAGCGTCCTGCTGATAGTTTCAATAATGGCCCCGACATTGGAGGGGTCGAAAAGACAGAGAGGAAAGATAAGGTTGGGCAGGACAAAACTCAAGTGAACAGGAACCCAGAAATTCAGCCTGTATCAATCATTGCTTCATCATCTGGAAAGTCTACAAATCCCTCTCCTCCTGCCCGTCCAGCTGGTCTTGGGCGTGCTGCTCCATTATTGGAACCTACCCCTCGGGTGGTGCAGCCGCCTCGAGTTAATGGTACTGTATCTCATGTTCAAATGCAACAAATTGATGATCCTGTTAATGGGGATGCCGAGGAAAATGATGATACTCGTGAGCAACTCCAGATGATAAGAGTGAAATTCTTGCGTCTTGCACACAGGCTTGGGCAAACTCCGCACAATGTTGTTGTGGCACAAGTTCTATACCGTCTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGTGGTCGGGTTGGTGCCTTTAGCTTTGACCGTGCTAGTGCCATGGCAGAGCAGCTGGAGGCAGCTGGGCAGGAACCACTTGATTTCACTTGTACAATCATGGTTCTTGGAAAGACGGGTGTGGGTAAAAGCGCTACCATCAACTCCATATTCGATGAAGTTAAATTCAGTACTGATGCTTTTCAAATGGGCACAAAAAAGGTTCAAGATGTGGTGGGAACTGTGCAGGGGATCAAAGTGCGAGTCATCGACACTCCTGGTCTTCTTTCTTCTTGGTCAGACCAGCGCCAAAACGAGAAGATCCTTCTTTCTGTTAAGCGCTTTATAAAGAAGACGCCTCCAGATATTGTTTTGTACCTTGATCGGTTGGACATGCAATGCCGGGATTCGAGTGACATGCCTCTCTTGCGTACAATTACTGAAATATTTGGACCTTCAATATGGTTCAATGCAATTGTGGTTCTTACTCATGCAGCATCTGCTCCACCCGATGGTCCAAATGGTACTGCTTCTAGTTATGATATGTTCGTCACGCAGCGATCTCATGTTGTACAGCAAGCTATACGCCAGGCTGCAGGGGATATGCGACTTATGAATCCGGTCTCGTTGGTGGAGAATCACTCTGCTTGCAGAACAAACAGAGCTGGGCAAAGGGTATTGCCAAATGGTCAGGTTTGGAAACCTCATCTGTTATTACTCTCGTTTGCATCCAAGATTTTGGCCGAAGCTAACACTCTTTTGAAGTTGCAAGATAGTCCTCCCGGAAGGCAATTTGCTCCTCGGTCGAAGTCACCTCCTTTACCGTTCCTTCTCTCCTCCCTTCTTCAATCCAGACCTCAAGTGAAACTGCCAGAAGAACAGTTTTCTGATGATGATGGTCTTGAGGATGACCTTGATGAATCATCAGATTCCGAAAATGAATCTGAATATGATGAATTGCCACCTTTTAAACGATTAACGAAGGCACAGATGGCAAAGCTCTCCAAAGAACAGAAAAATGCCTACTTTGACGAGTTGGAATACAGGGAAAAACTTTTTATGAAGAAGCAACTAAAAGAAGAGAAAATGAGAAGGAAGATCATGAAGAAAATGGCTGCGGAGGCAAAACGTCAACCCAGCGACTATAGTGAAAACGTAGAAGAAGATAGTGGTGCTGCGGCATCCGTTCCAGTTCCCATGCCCGATTTGGCATTACCTGCTTCCTTTGATTCTGATAATCCCACTCACCGGTATCGTTATCTTGATTCCTCTAACCAGTGGCTAATTAGGCCCGTACTCGAAACACATGGATGGGATCACGATGTTGGATATGAAGGCATAAACGCAGAGAAGTTGTTTGTCATAAAAGATGCAATACCCATCTCTTTTAGTGGTCAAGTTACAAAGGATAAGAAGGATGCAAATGTTCAAATAGAGATGAACAGTTCAATAAAGCATGGGGAGACTAAATCATCCTCCATTGGTTTTGATATGCAAACTGTTGGGAAGGATTTGGCCTATACGCTACGAGGTGAGACGACGTTCATTAATTTTAGGAAGAACAAAGCAATTGCTGGTCTATCAATTGCTCTATTAGGTGACGCCTTATCTGCAGGATTCAAAGTTGAGGACAAATTGATTGCTAATAAGCGATTTCGTTTAGTTGTGACCGGGGGTGCAATGACTGGCAGAGGAGATTTAGCTTATGGTGGCAGCCTGGAAGCTCAATTGAGAGATAAAGATTATCCTTTGGGTCGTTCACTTTCAACTCTCGGGCTTTCGGTCATGGATTGGCATGGAGATCTTGCTATCGGTTGCAACGTACAATCTCAAGTTCCCGTTGGACGATCTACAAACCTGATTACTCGCATGAATTTGAATAACAGGGGAGCAGGGCAAGTCAGCTTTCGGTTAAACAGCTCCGAACAGCTTCAGATCGCTATTGTTGGTCTCCTTCCTCTACTCAGAAAGCTTCTGGGTAGTTATCAACAGTGGCAGTATGGACAATGA 3609 44.06 MENGVEIVDALHHGETKFVEDGVDERVVVGSCESKVTEKEDGKEHLIEQSSKYGSVNGDVAEEEVYGFESGLISDHLNGARDEDKFEEAIQASRGVNENTAVEQDVISGKEKEDLGGNLVDNVAVATKVDERGIEEEAVSSDLNELNFSRDDLGKETSDNGASPEVGVLKGEDWDDPKFGSMSMKSEKEDNLVNKTADMVEGTKLDSTSKIRTENGNGVELKKKRLGMESTDHDEKTDEPLNAPAVLDLDYQDNMNGELKDDSPNADLELPGHGNEEMKKASAGIDLNEDNNDEESSSMCMTTTNQDHRIEEVKDASTGKDSDEQSAESCELNGTTSVDEHKPVCEIKISMETVKDISASEKIADEKIEKIQGGESDMTVKENIMSGRQRPADSFNNGPDIGGVEKTERKDKVGQDKTQVNRNPEIQPVSIIASSSGKSTNPSPPARPAGLGRAAPLLEPTPRVVQPPRVNGTVSHVQMQQIDDPVNGDAEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFTCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLSSWSDQRQNEKILLSVKRFIKKTPPDIVLYLDRLDMQCRDSSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRQFAPRSKSPPLPFLLSSLLQSRPQVKLPEEQFSDDDGLEDDLDESSDSENESEYDELPPFKRLTKAQMAKLSKEQKNAYFDELEYREKLFMKKQLKEEKMRRKIMKKMAAEAKRQPSDYSENVEEDSGAAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVIKDAIPISFSGQVTKDKKDANVQIEMNSSIKHGETKSSSIGFDMQTVGKDLAYTLRGETTFINFRKNKAIAGLSIALLGDALSAGFKVEDKLIANKRFRLVVTGGAMTGRGDLAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAIGCNVQSQVPVGRSTNLITRMNLNNRGAGQVSFRLNSSEQLQIAIVGLLPLLRKLLGSYQQWQYGQ 1202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9127841 9131449 - CmaCh11G013850.1 Cma11g01385 303894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01385 1202 MobiDBLite consensus disorder prediction 419 443 - -
Cma11g01385 1202 Pfam AIG1 family 571 704 IPR006703 GO:0005525
Cma11g01385 1202 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 447 1196 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Cma11g01385 1202 MobiDBLite consensus disorder prediction 216 241 - -
Cma11g01385 1202 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 361 1196 - -
Cma11g01385 1202 MobiDBLite consensus disorder prediction 403 418 - -
Cma11g01385 1202 MobiDBLite consensus disorder prediction 150 340 - -
Cma11g01385 1202 Pfam Translocase of chloroplast 159/132, membrane anchor domain 929 1192 IPR024283 -
Cma11g01385 1202 Coils Coil 891 911 - -
Cma11g01385 1202 MobiDBLite consensus disorder prediction 254 287 - -
Cma11g01385 1202 MobiDBLite consensus disorder prediction 829 849 - -
Cma11g01385 1202 MobiDBLite consensus disorder prediction 906 932 - -
Cma11g01385 1202 ProSiteProfiles AIG1-type G domain profile. 568 797 IPR006703 GO:0005525
Cma11g01385 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 705 IPR027417 -
Cma11g01385 1202 MobiDBLite consensus disorder prediction 386 468 - -
Cma11g01385 1202 MobiDBLite consensus disorder prediction 307 327 - -
Cma11g01385 1202 Gene3D - 539 788 IPR027417 -
Cma11g01385 1202 CDD Toc34_like 543 788 - -
Cma11g01385 1202 MobiDBLite consensus disorder prediction 825 856 - -
Cma11g01385 1202 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 361 1196 IPR045058 -
Cma11g01385 1202 MobiDBLite consensus disorder prediction 169 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01385 - - - csv:101205042 1829.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01385 Cma19g00728 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01266 Cma-Chr5:9670604 Cma11g01385 Cma-Chr11:9127841 3.80E-174 dispersed
Cma11g01385 Cma-Chr11:9127841 Cma19g00728 Cma-Chr19:7336324 0 dispersed
Cma11g01385 Cma-Chr11:9127841 Cma14g00895 Cma-Chr14:4630002 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01385 Cma_Chr11 FPKM 12.139791 14.841599 81.179886 81.223976 23.20067 22.821535 22.475546 36.833069 33.698158 33.335541