Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01388 ATGAGCATCTTTCACCCCCCTCCTCCGCCGTCCTCCTCCGCCGTGAAGTGGCTCAGCCTAGTCTCCGCCGTCTGGGTCCAATCCATCGCTGGCAACAACTACACCTTCTCTAACTACTCCGCCGCCCTCAAATCCCTCATGAACCTCTCCCAGCTCCAACTCAACAATCTCTCCGTCGCCAAAGACTTAGGCAAAGCCTTTGGCCTCCTTTCTGGCCTTGCCTCCGACCGCCTCCCCACCTCCCTCCTCCTCCTTATCGGCTCCCTCGAAGGTCTTATTGGCTACGGCGGCCAATGGCTCGTCGTCAGCAAAACAATCAACCCCCTCCCTTACTGGCAGATAAGTATTTTTATGTGCATGGGAGGGAATAGTAGCACTTGGATGAACACCGCCGTGCTCGTTACTTGCCTCAGAAACTTCCGGCGAAACATAGGCTCTGTTTCTGGCGTTCTCAAAGGCTACGTCGCTCTCAGCACCGCCATTTTCACCGATCTCTGTTTCGCCCTTTTCTCCAATGATCCCTCTTCCTTTCTCGCCCTTCTCGCCGTCGTCCCCTTCGCCGTTTGCCTCATTGCCATTCTCTTCCTCCGTGAAACCCCCTTCGCCGTCGATAATGAAACAGAGGATTCCCAATACTTCTGGGTCCTCAACGCTATCGCCGTCGCCGTCGCCGTCAGTCTCTTGGCCTTTGATTTGATCCCCAATCCCACCTCATCCGTATCGATAATTTTCTCCATTGTGTTATTGATTCTCCTCGTTTCCCCTCTGGTAATCCCAATTCACTCATTCCTCAAGAACAGGGGCCGGTCCGGTGCGGCTGCAGAGGCGTTGTTGGCGGCTGAGGAAGTGGCGGAGGTGGAGGGAAATGGGAATCCGGTGATAGGAGAAGATCACACGATTGTGGAGGCGATGAAGACAGTTGAATTTTGGCTTCTGTTTGTGTCGTTTTTGTTCGGAGTGGGTACGGGATTGGCAGTGATGAACAACATGGGTCAAATCGGATTGGCTCTTGGATACGACGACGTTTCGAGCTTCATCTCTTTGATGAGCATTTGGGGGTTTTTTGGCCGGATTTTATCGGGATCGGCGTCGGAGTATTTCATCAAGAAAGCAGGAATGGCAAGGCCACTGTGGAACGCAGCTTCTCAAATTCTAATGGCAATCGGCTACATTCTCTTAGCCATTGGCATGCCTAGTTCCTTATACATCGGCTCGATCATTGTCGGTATCTGTTACGGTGTTCGTCTCGCCATCAGTGTCCCGATCGCCTCTGAAATTTTTGGGCTCAAAGACTATGGCATGATCTACAACGTTCTGATCCTCAACCTCCCACTCGGTTCGTTCCTCTTCTCGGGGCTGCTGGCCGGGATTCTCTACGACATGGAGGCGACGAAGATAGAGGAGGGTGGGAACACGTGCATGGGAGCGCATTGTTATAGGCTTGTGTTTGTGGTAATGGCTTGTTCATGTGTGGTTGGGCTTGGCGTGGACTTGCTTTTGTTCATTAAAACTAAGAGATTGTACTCCAAAACAAGGGATGGAAGGTGA 1548 52.2 MSIFHPPPPPSSSAVKWLSLVSAVWVQSIAGNNYTFSNYSAALKSLMNLSQLQLNNLSVAKDLGKAFGLLSGLASDRLPTSLLLLIGSLEGLIGYGGQWLVVSKTINPLPYWQISIFMCMGGNSSTWMNTAVLVTCLRNFRRNIGSVSGVLKGYVALSTAIFTDLCFALFSNDPSSFLALLAVVPFAVCLIAILFLRETPFAVDNETEDSQYFWVLNAIAVAVAVSLLAFDLIPNPTSSVSIIFSIVLLILLVSPLVIPIHSFLKNRGRSGAAAEALLAAEEVAEVEGNGNPVIGEDHTIVEAMKTVEFWLLFVSFLFGVGTGLAVMNNMGQIGLALGYDDVSSFISLMSIWGFFGRILSGSASEYFIKKAGMARPLWNAASQILMAIGYILLAIGMPSSLYIGSIIVGICYGVRLAISVPIASEIFGLKDYGMIYNVLILNLPLGSFLFSGLLAGILYDMEATKIEEGGNTCMGAHCYRLVFVVMACSCVVGLGVDLLLFIKTKRLYSKTRDGR 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9145498 9147842 - CmaCh11G013880.1 Cma11g01388 303897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01388 515 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 10 512 - -
Cma11g01388 515 Pfam Nodulin-like 16 260 IPR010658 -
Cma11g01388 515 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 10 512 - -
Cma11g01388 515 SUPERFAMILY MFS general substrate transporter 7 506 IPR036259 -
Cma11g01388 515 Gene3D MFS general substrate transporter like domains 14 207 IPR036259 -
Cma11g01388 515 CDD MFS_Mch1p_like 16 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00243 Cma-Chr2:1081025 Cma11g01388 Cma-Chr11:9145498 0 dispersed
Cma11g01388 Cma-Chr11:9145498 Cma14g01365 Cma-Chr14:10596292 9.51E-107 dispersed
Cma11g01388 Cma-Chr11:9145498 Cma20g00761 Cma-Chr20:3590690 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01388 - - cmo:103490296 755.747