Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01390 ATGCCGGCAATGGCTTCTCCATGGGGCAAACCAGGCGCTTGGGCGCTAGATTCCGAGGAGCACGAAGCTGAACTCCTCAAAGAAGAGCAGGAGCAGGAGCAGCAGCAGAAGAAGGCGGAGCTCAGCCTGGATTTTCCGTCCCTCAACGACGCCTTGGCCACCAAGCAGAAGAAGAAAGGGCAAACTCTCTCGTTGGCGGAGTTCACCGCCCATGGCGTGTGGAGGACAACGAAAATGGCGATGGCGAAGGGGACGGGGACGGGAACAAGAACGAAGCTTGATGAATGTAATACTGAGAGATTGAAAGACAGACATGGAACAAAGCAAAGGAAAGCATCTATGGAAGCTGGGCCAGTTCTTGATCTGTTCCTTCTTGAAATGGGTAAGTTCTACTCAACGCTTTATGAAATGTCTCTTTTTTTAAGTAATAGCATATTGAGATTCAACTCATCTATGACAATACGGTCCCAATCTCCGTCCATACGCTCCTACCGCCGCCGCCGTCGTCGCCACTATCCAAAAATGAACATCGTCTTCTTCCTCTCGGCTTTCTTATTCTTCATCGGAGCCAACAGTTCTCAATTTCCGATCGACGAAGCAACCGTCGCCGAAATCCAACACGCCTTCTCCCAAAACAAGCTCACCTCCAGAGAACTTCTCGATCACTACCTCAACAAGATCGATTTTCTTAATCCAGTGCTTAAAAGCGTTCTCGAAGTGAATCCTGATGCGAGAGCTCAAGCGGAAGCCGCCGATCGAGAGAGGGAGCTCGCTGGAGGAAAAGCCCTTGGCGAACTCCATGGAATTCCAGTGCTGCTCAAGGATTCTATTGGAACCAAGGATCGGCTCAATACCACGGCCGGTTCCTTCGCATTGCTTGGTTCGGTGGTGCCTCGAGATGCGAAGGTGGTCCATCGCCTGAGGAACGCCGGTGCGGTGATTTTGGGGAAAACTTCGCTCACTGAGTGGTATGGGTCTCGGTCTATGAAGATTCCCCATGGTTGGTGTGCTCGCGGCGGTCAAGCCCTGAACCCATATGGGAAAGGAGGGGATCCCTGCGGTTCAAGCAGTGGCTCAGCCATATCAGTGGCCGCCAACATGGCGGCGGTGTCGTTAGGAACCGAGACAGATGGCTCAATTTTGTGTCCGGCCGATTACAACTCTGTCGTCGGCATCAAACCCACCGTCGGTCTCACGAGCCGTGCCGGCGTTATCCCCATCTCTCCCCGGCAAGACACAATCGGGCCCATATGCAGGACAGTTTCTGATGCTGTTTATGTTCTTGATGCTATTGTTGGGTTTGATCCAATGGACTCTGAGGCAACCAAGGTTGGATCTCAATTCATTCCGTCTGGTGGATATAAGCAATTTCTGAAGAGAGATGGGCTTACAGGAAAACGATTGGGCATTGTTAGGCATCCCTTTTCTGATTTGTATGCCAATGAATCCACGGCCATTCAATCCTTTGAGCATCATGTCAAGCTGCTAAGGAAAAGTGGAGCAACCATTGTAGACAACCTTCAAATATCAAATGTAGCTGCAATTCTGAATCCTTATGAAAGTGGTGAATTAGTTGCAATGATAGCTGAGTTCAAGCTCACCATAAACGATTACCTCAAGAACCTGATCCAAAAGTATGGCCAAGATGCCTTTCTTTTATCCGAGCAAACCGAGGGGATCGGAGAGGCAGAGAAGGCAGCGATTAGTATGATGGAAAACTTATCAAGACATGGATTTGAGGAAATGATGAAGACCTATAATCTGGATGCAATGGTAACATTAGGGACTGGAGCCGAAACTGTTCTAGCTATTGGGGGATATCCTGCCATCTCTGTCCCTGCTGGATATGAAGGAAACGGAGAGCCGTTTGGCATCCTCTTTTCGGGTCTTAAGGGGACCGAACCGAAGCTGATCGAGATCGCTTATGCATACGAACAAGCCACCATGGATCTACAGGCCAAGAGACAGTCTCAAGTAGATAGTTACTATGGGACGCGCGTGGCGGTTCATGCCCCAAAGGATGAGCTTTGGAGCTTGCGTTATCAGTTTAGGGGCGGTTTGTTTTTTGCTGAGGTCGAGGCATTTACTTCTGTTTCGTTCGTTCATCTGCGTATTATAACATCCAATCCAATTGATTCATCTTCGTCTTCATCCTCAGACACCGAGTACCTCAAGGAGATCGAAAAGGCTCGCCGTGACCTCCGTGCTCTCATTGCCAACCGGAACTGCGCGCCGATCATGCTTCGTTTGGCTTGGCACGACGCTGGTACGTATGATGTGAGTACGAAAACTGGTGGGCCTAATGGATCGATTAGGAATCAGGAGGAGTATTCTCATGGTTCTAATAATGGTCTGAAAAAGGCTATTGATTTTTGTGAGGAAGTGAAATCTAAACATCCGAAGATTACTTATGCAGACTTATACCAGCTAGCTGGTGTAGTTGCCGTTGAGGTCACTGGAGGCCCCACTATTGACTTTGTTTCTGGTAGAAAGGATTCAAGAATTTCTCCCAGGGAAGGCCGACTTCCTGATGCAAAAAAAGGTGCACCACATCTGCGTGACATTTTTTATAGAATGGGCCTGTCTGACAAGGATATTGTTGCATTGTCTGGGGGTCACACATTGGGAAGAGCACATCCGGAGAGATCTGGTTTTGATGGACCTTGGACAGAGGATCCTCTGAAGTTTGATAACTCTTATTTTGTGGAACTGTTGAAAGGAGAATCAGAAGGACTATTAAAACTTCCTACTGATAAGGCTTTACTTGAAGATCCTGAGTTCCGTCCGTACGTCGAATTGTATGCAAAAGATGAAGATGCATTCTTCAAAGATTATGCTGAATCACACAAGAAACTCTCAGAGCTAGGCTTCACTCCAGGTTCCGCTAGGGCAATTGCGAACGACAGCACTGTATTAGCACAAGGTGCCGTCGGAGTTGCGGTTGCAGCTGCTGTGGTAATTCTGAGCTATTTCTATGAAATTCGCAAAAATTTGAAGTAA 3000 48.27 MPAMASPWGKPGAWALDSEEHEAELLKEEQEQEQQQKKAELSLDFPSLNDALATKQKKKGQTLSLAEFTAHGVWRTTKMAMAKGTGTGTRTKLDECNTERLKDRHGTKQRKASMEAGPVLDLFLLEMGKFYSTLYEMSLFLSNSILRFNSSMTIRSQSPSIRSYRRRRRRHYPKMNIVFFLSAFLFFIGANSSQFPIDEATVAEIQHAFSQNKLTSRELLDHYLNKIDFLNPVLKSVLEVNPDARAQAEAADRERELAGGKALGELHGIPVLLKDSIGTKDRLNTTAGSFALLGSVVPRDAKVVHRLRNAGAVILGKTSLTEWYGSRSMKIPHGWCARGGQALNPYGKGGDPCGSSSGSAISVAANMAAVSLGTETDGSILCPADYNSVVGIKPTVGLTSRAGVIPISPRQDTIGPICRTVSDAVYVLDAIVGFDPMDSEATKVGSQFIPSGGYKQFLKRDGLTGKRLGIVRHPFSDLYANESTAIQSFEHHVKLLRKSGATIVDNLQISNVAAILNPYESGELVAMIAEFKLTINDYLKNLIQKYGQDAFLLSEQTEGIGEAEKAAISMMENLSRHGFEEMMKTYNLDAMVTLGTGAETVLAIGGYPAISVPAGYEGNGEPFGILFSGLKGTEPKLIEIAYAYEQATMDLQAKRQSQVDSYYGTRVAVHAPKDELWSLRYQFRGGLFFAEVEAFTSVSFVHLRIITSNPIDSSSSSSSDTEYLKEIEKARRDLRALIANRNCAPIMLRLAWHDAGTYDVSTKTGGPNGSIRNQEEYSHGSNNGLKKAIDFCEEVKSKHPKITYADLYQLAGVVAVEVTGGPTIDFVSGRKDSRISPREGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFKDYAESHKKLSELGFTPGSARAIANDSTVLAQGAVGVAVAAAVVILSYFYEIRKNLK 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9161690 9174661 - CmaCh11G013900.1 Cma11g01390 303899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01390 999 Gene3D Amidase signature (AS) domain 188 654 IPR036928 -
Cma11g01390 999 Gene3D Peroxidase, domain 2 843 949 - -
Cma11g01390 999 PANTHER AMIDASE 186 650 - -
Cma11g01390 999 MobiDBLite consensus disorder prediction 23 43 - -
Cma11g01390 999 Pfam Plant specific eukaryotic initiation factor 4B 4 75 IPR010433 GO:0003743
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 762 772 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 841 858 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 776 800 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 820 832 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 723 743 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 881 905 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 933 957 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 801 819 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 744 759 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Plant ascorbate peroxidase signature 859 880 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Haem peroxidase superfamily signature 802 819 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Haem peroxidase superfamily signature 820 832 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Haem peroxidase superfamily signature 744 758 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Haem peroxidase superfamily signature 889 904 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 PRINTS Haem peroxidase superfamily signature 865 880 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 ProSitePatterns Peroxidases proximal heme-ligand signature. 865 875 IPR019793 -
Cma11g01390 999 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 186 650 - -
Cma11g01390 999 MobiDBLite consensus disorder prediction 23 38 - -
Cma11g01390 999 CDD ascorbate_peroxidase 722 959 - -
Cma11g01390 999 Pfam Amidase 218 578 IPR023631 -
Cma11g01390 999 Pfam Peroxidase 731 937 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 Gene3D - 730 956 - -
Cma11g01390 999 ProSitePatterns Peroxidases active site signature. 744 755 IPR019794 GO:0004601
Cma11g01390 999 ProSiteProfiles Plant heme peroxidase family profile. 744 999 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01390 999 SUPERFAMILY Amidase signature (AS) enzymes 170 647 IPR036928 -
Cma11g01390 999 Coils Coil 16 40 - -
Cma11g01390 999 SUPERFAMILY Heme-dependent peroxidases 703 962 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01390 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - csv:101205749 741.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00854 Cma-Chr2:4987170 Cma11g01390 Cma-Chr11:9161690 1.71E-91 dispersed
Cma04g02371 Cma-Chr4:16425135 Cma11g01390 Cma-Chr11:9161690 8.41E-72 dispersed
Cma11g01390 Cma-Chr11:9161690 Cma19g00735 Cma-Chr19:7366044 4.23E-172 dispersed
Cma11g01948 Cma-Chr11:12799292 Cma11g01390 Cma-Chr11:9161690 4.90E-33 dispersed
Cma12g00339 Cma-Chr12:1722645 Cma11g01390 Cma-Chr11:9161690 2.71E-37 dispersed
Cma19g01060 Cma-Chr19:8921352 Cma11g01390 Cma-Chr11:9161690 8.11E-31 dispersed
Cma06g00716 Cma-Chr6:3599819 Cma11g01390 Cma-Chr11:9161690 2.44E-28 transposed
Cma11g01390 Cma-Chr11:9161690 Cma19g00726 Cma-Chr19:7325682 2.30E-169 wgd
Cma11g01390 Cma-Chr11:9161690 Cma02g00325 Cma-Chr2:1568498 1.48E-12 wgd
Cma11g01390 Cma-Chr11:9161690 Cma20g00766 Cma-Chr20:3618353 1.73E-12 wgd
Cma11g01390 Cma-Chr11:9161690 Cma03g00672 Cma-Chr3:5585762 6.41E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma11g01390 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01390 Cma_Chr11 FPKM 31.616991 34.172325 22.000479 21.423882 21.190647 21.639227 22.796263 30.541737 31.903421 31.151749