Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01391 ATGTCGATTTCGGAGAATACGAAGGGTCTGATTCTGGCTATGGCGTCGAGTGCGTTTATTGGATCGAGTTTTATCTTGAAGAAGAAAGGACTTAAGCGTGCCGGAGCCACAGGGGCGAGAGCAGGTGTTGGTGGTTATACGTACCTGTTAGAGCCACTTTGGTGGGCAGGCATGGTTATAATGATAATTGGAGAAGTTGCGAACTTTGTAGCATATATTTATGCCCCAGCAGTTTTAGTCACGCCTCTCGGTGCACTGAGCATTATTGTCAGTGCTGTTTTAGCCCACTTCTTATTGAAGGAGAGGCTGCAGAAAATGGGTGTTGTAGGGTGTTTATCCTGTATAGTAGGATCAGTTATAATAGTTATTCATGCACCTCAGGAACGTACTCCTGATTCTGTTGAAGAAATCTGGAATTTAGCAACTCAACCAGCTTTTCTAGTCTACCTTGCTGCTACAGCTTCGTTAGTGTTGGTTCTTATGTTGTATTTTGAACCTCGCTATGGACATGTAAATATATTAGTCTACTTGGGAATCTGTTCTTTAATGGGTTCATTGACGGTTATGAGTATTAAAGCTATTGGAATAGCGATAAGACTTACACTTGAAGGGGTAAGCCAAGTAGCTTACCCTCAAACTTGGCTTTTTGTTACAGTTGCAGTAGTATGTGTCGTCACACAACTTAATTACTTGAATAAGGACTGGTCAGGTCAGAACGTAAGTACTATAGTCTCTGAGTTATGTGGATTCATTACCGTCCTTTCTGGAACTATGATTCTCCACTCAACAAGAGAACAACAACCAGTCCCTTCACAAGGATCTGTAGCGTGGTATATTAGTGGGGATTCAATGAAAGGTATTGAAGAACACTTGATCACCATAAGCAATTCACATTACACTGAAGAATGA 909 41.47 MSISENTKGLILAMASSAFIGSSFILKKKGLKRAGATGARAGVGGYTYLLEPLWWAGMVIMIIGEVANFVAYIYAPAVLVTPLGALSIIVSAVLAHFLLKERLQKMGVVGCLSCIVGSVIIVIHAPQERTPDSVEEIWNLATQPAFLVYLAATASLVLVLMLYFEPRYGHVNILVYLGICSLMGSLTVMSIKAIGIAIRLTLEGVSQVAYPQTWLFVTVAVVCVVTQLNYLNKDWSGQNVSTIVSELCGFITVLSGTMILHSTREQQPVPSQGSVAWYISGDSMKGIEEHLITISNSHYTEE 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9175944 9180209 - CmaCh11G013910.1 Cma11g01391 303900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01391 302 PANTHER MAGNESIUM TRANSPORTER NIPA6-RELATED 233 301 - -
Cma11g01391 302 PANTHER UNCHARACTERIZED 3 233 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cma11g01391 302 PANTHER MAGNESIUM TRANSPORTER NIPA6-RELATED 3 233 - -
Cma11g01391 302 PANTHER UNCHARACTERIZED 233 301 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cma11g01391 302 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 124 - -
Cma11g01391 302 Pfam Magnesium transporter NIPA 6 233 IPR008521 GO:0015095|GO:0015693|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01391 K22733 NIPA, SLC57A2S; magnesium transporter - csv:101205979 510.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01391 Cma-Chr11:9175944 Cma16g00391 Cma-Chr16:1914175 4.33E-114 dispersed
Cma11g01391 Cma-Chr11:9175944 Cma09g01165 Cma-Chr9:6916312 4.77E-138 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g119 . . . . . . . . Cmo19g00735 Cmo11g01727 . . . . Sed05g2232 Cpe04g00579 Cpe15g00581 Bhi05g01740 Tan02g0707 Cmetu01g1169 . Hepe02g0441 . . Cla02g00443 Cam02g0452 Cec02g0450 Cco02g0469 Clacu02g0453 Cmu02g0448 Cre02g0781 Cone12ag1216 Cone8ag1268 . . . Csa07g00083 . Cme01g01281 Blo04g00555 . . Bda14g00604 Bpe15g00826 . Bma03g00595 . . . . Cma11g01391 . . Car19g00555 . . . . . . . . . . . . . . . . Lsi11g01183 . Chy01g00695 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01391 Cma_Chr11 FPKM 2.307652 2.205445 1.974403 2.472083 5.159726 5.225965 5.540016 1.551553 1.711112 1.758193