Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01397 ATGTCGATTTCTTCGTCGAATCCGACCCGGAATGGGAGTGTTAAAAACAACGATATGTTACACAATGTTAATGAGATTGAAGAAAAGAGTTTAGGTTGTCTAGAAATGTCGATTTCTTCGTCGAATCCGACCCAGAATGGGAGTGTTAAAAACAACGATACGTTACACAATAATAGTCAGATTGAAGAAAGTGAGTTTTCCAAGCTATTGGATAGGCCAAGGCCATTGAACATGGAGAGACAGAGATCATTTGATGAAAGATCGCTTGCGGACTTGGCGATTGGTTTCTCCCCACGCTTATCTTCGAGAGTTTCTTCGGAGAACTTTACTCGATTGATAGACAATTATGATCAAACTCCATCTCCTGGTAGAAGATCGGATTTCAATACTCCAAGATCCCAGATTGGATTCGAGCAGCATCCTATGGTGGCCGAAGCTTGGGATGCTTTGAGGCGTTCGTTGGTCCATTTTCGTGGCCAACCAGTTGGTACTATTGCTGCTTTGGACAGTACTGAAGAAAATCTTAATTATGATCAAGTGTTCGTGAGAGACTTTGTCCCAAGCGCATTTGCTTTTCTAATGAATGGGGAGCCTGAGATTGTAAAAAACTTCATTTTAAAGACGCTACGGCTTCAGTCGTGGGAGAAAAAGATCGACAGGTTCCAGCTTGGAGAAGGGGTGATGCCTGCTAGTTTCAAAGTACTTCATGATCCAGTGAGGAATTCTGAAACTTTAATTGCAGATTTTGGAGAGAGTGCAATAGGAAGAGTTGCTCCAGTTGACTCCGGATTCTGGTGGATTATATTGCTACGAGCATACACAAAGTCCACTGGTGACTCTTCCTTGGCTGAACTACCAGAATGTCAAAAGGGAATGCGCCTTATTTTGAGTCTCTGTCTTTCCGAAGGGTTCGACACGTTCCCTACTCTTCTCTGTGCCGATGGATGCTGCATGATTGATAGACGAATGGGTGTATATGGCTACCCAATTGAAATTCAAGCTCTTTTCTTTATGGCTTTAAGGTGTGCTTTGCTTTTGCTAAAGCACGACCACGAGGGGAAGGACTTTATCGAAAGAATAACAAAACGACTTCTTGCTTTGAGCTATCACATGAGAACTTACTTTTGGCTAGACCTAAAGCAACTAAACGATATATATCGATATAAAACTGAAGAATACTCTCACACTGCTTTGAACAAGTTCAACGTAATACCCGATTCTCTTCCCGAATGGATTTTCGACTTCATGCCAATTCATGGCGGTTACTTTATTGGAAATGTCAGCCCTGCAAGAATGGACTTCCGCTGGTTTTGCTTGGGCAACTGCATTGCAATTCTTTCTGCCTTGGCAACTCCAGAACAGTCCACTGCTATTATGGACCTTATTGAATCACGGTGGGAAGAACTGGTCGGAGAAATGCCGCTAAAGGTTTGTTACCCTGCCATTGAAAGCCATGAGTGGCGGATTATAACCGGGTGTGATCCAAAAAATACGAGATGGAGTTACCACAATGGTGGTTCTTGGCCAGTTCTCCTATGGCTTCTAACAGCTGCATGTATCAAAACCGGGCGACCCCAGATTGCAAGACGTGCAATCGAACTAGCTGAAACCAGGCTACTGAAGGACAGCTGGCCTGAATATTACGACGGGAAACTCGGCCGATACATCGGGAAACAGGCAAGGAAGTTTCAGACGTGGTCGATTGCAGGTTATTTAGTAGCGAAGATGATGCTGGAAGACCCGTCGCATGCAGGCATGGTGTCTCTGGAGGAAGACAGGCAGATGAAGCCATTAATGAAAAGGTCACATTCATGGACTTGTTAG 1824 44.08 MSISSSNPTRNGSVKNNDMLHNVNEIEEKSLGCLEMSISSSNPTQNGSVKNNDTLHNNSQIEESEFSKLLDRPRPLNMERQRSFDERSLADLAIGFSPRLSSRVSSENFTRLIDNYDQTPSPGRRSDFNTPRSQIGFEQHPMVAEAWDALRRSLVHFRGQPVGTIAALDSTEENLNYDQVFVRDFVPSAFAFLMNGEPEIVKNFILKTLRLQSWEKKIDRFQLGEGVMPASFKVLHDPVRNSETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLAELPECQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALLLLKHDHEGKDFIERITKRLLALSYHMRTYFWLDLKQLNDIYRYKTEEYSHTALNKFNVIPDSLPEWIFDFMPIHGGYFIGNVSPARMDFRWFCLGNCIAILSALATPEQSTAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIITGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIELAETRLLKDSWPEYYDGKLGRYIGKQARKFQTWSIAGYLVAKMMLEDPSHAGMVSLEEDRQMKPLMKRSHSWTC 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9196779 9201841 + CmaCh11G013970.1 Cma11g01397 303906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01397 607 Gene3D - 170 576 IPR012341 GO:0005975
Cma11g01397 607 MobiDBLite consensus disorder prediction 1 20 - -
Cma11g01397 607 Pfam Alkaline and neutral invertase 146 581 IPR024746 GO:0033926
Cma11g01397 607 MobiDBLite consensus disorder prediction 37 74 - -
Cma11g01397 607 PANTHER ALKALINE/NEUTRAL INVERTASE B-RELATED 37 606 - -
Cma11g01397 607 PANTHER - 37 606 IPR024746 GO:0033926
Cma11g01397 607 MobiDBLite consensus disorder prediction 37 64 - -
Cma11g01397 607 SUPERFAMILY Six-hairpin glycosidases 154 574 IPR008928 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01397 - - - cmax:111486232 1246.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00977 Cma-Chr1:6810676 Cma11g01397 Cma-Chr11:9196779 0 dispersed
Cma11g01397 Cma-Chr11:9196779 Cma12g01016 Cma-Chr12:8077406 0 dispersed
Cma11g01397 Cma-Chr11:9196779 Cma09g01113 Cma-Chr9:6120191 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g97 . . Bda06g00969 . . . . Bma12g00525 . Cmo11g01723 . . . . . Cpe04g00574 . Bhi05g01747 . . . . . . Cla02g00449 Cam02g0456 Cec02g0455 Cco02g0474 Clacu02g0457 Cmu02g0452 Cre02g0786 Cone12ag1209 Cone8ag1261 . . . Csa07g00078 . Cme01g01286 . . . . . . . . . . . Cma11g01397 . . . . . . . . . . . . . . . . . . . Lsi11g01179 . Chy01g00699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01397 Cma_Chr11 FPKM 1.572587 1.44569 7.838305 8.003069 7.291213 6.342442 6.74924 2.641158 2.522519 2.142375