Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01399 ATGCCTTCCATTGTAGCGTTTGAGCATTTAAACTTTCTAGGTGATGAACAGGTAGTGCAGCTATATAGCTTTGTTGCCCTTGCAAACTGGAAAGAATCATTTGGTTCCCAAGTTTCAGAGATGGGAAAGGGAAATGGAGCACTAGGAGCTACCAAGGGAAAGGCTAACCCTGGCAGAGCAACAATTCTGGCTCTTGGGAAGGCCTTCCCTCCCCAACTTGTCCTTCAAGACTACCTGGTTGATAGCTATTTCAAGGATACGAGCTGCGATGATTTAGACCTCAAGCGGAAGCTCACTCGACTCTGCAAGACAACATCAGTCAAAACTAGATACGTGGTGATGTCAGAAGAGATCCTGAAGAAGCACCCAGAGATGGCAATGGAAGGCCAAGCAACCATAAAGCAAAGACTGGAGATCTGCAACAAAGCTGTGACAGACATGGCCATTGAAGCCTCACAAGCTGCTATTAAGAACTGGGGAAGGCCACTTTCACACATTACCCATTTAGTCTATGTCTCTTCAAGTGAAGCTCGCCTGCCTGGTGGTGATCTCTTCCTAGCAAGAGGCCTTGGACTCAGCCCTCACACCCAACGGTTCATGCTTTACTTCATGGGTTGCTCTGGAGGCGTGGCAGGCCTTAGAGTCGTCAAAGACTTGGCTGAAAACAACCCCGGAAGCCGAGTTCTGCTTGTCACCTCTGAAACCACCATTATTGGCTACAAGCCATCAAGTGCCCGTCGTCCATACGATCTGGTAGGCGTGGCGCTATTTGGGGATGGTGCTGGGGCAATGCTAATTGGCGCGGACCCTGTTTTGGCCCATTGA 825 49.45 MPSIVAFEHLNFLGDEQVVQLYSFVALANWKESFGSQVSEMGKGNGALGATKGKANPGRATILALGKAFPPQLVLQDYLVDSYFKDTSCDDLDLKRKLTRLCKTTSVKTRYVVMSEEILKKHPEMAMEGQATIKQRLEICNKAVTDMAIEASQAAIKNWGRPLSHITHLVYVSSSEARLPGGDLFLARGLGLSPHTQRFMLYFMGCSGGVAGLRVVKDLAENNPGSRVLLVTSETTIIGYKPSSARRPYDLVGVALFGDGAGAMLIGADPVLAH 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9203077 9204250 - CmaCh11G013990.1 Cma11g01399 303908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01399 274 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 53 272 IPR011141 GO:0009058|GO:0016747
Cma11g01399 274 Pfam Chalcone and stilbene synthases, N-terminal domain 52 270 IPR001099 -
Cma11g01399 274 Gene3D - 35 271 IPR016039 GO:0016746
Cma11g01399 274 PANTHER TYPE III POLYKETIDE SYNTHASE B 53 272 - -
Cma11g01399 274 SUPERFAMILY Thiolase-like 57 270 IPR016039 GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01399 - - - csv:101210994 393.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01399 Cma-Chr11:9203077 Cma14g02150 Cma-Chr14:14729262 2.53E-99 dispersed
Cma11g01399 Cma-Chr11:9203077 Cma19g00721 Cma-Chr19:7303410 2.54E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g95 . . . . . Bpe12g00109 . . . Cmo11g01722 . . . . . Cpe04g00573 Cpe15g00577 . . . . . . . Cla02g00450 Cam02g0458 Cec02g0457 Cco02g0476 Clacu02g0459 Cmu02g0454 Cre02g0788 . . . . . . . . Blo04g00551 Blo13g00525 Bda15g01045 . . . . Bma08g00766 . . . Cma11g01399 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002086 1 1 2 2 1 2 2 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01399 Cma_Chr11 FPKM 0.50303 0.0 71.507118 69.71595 0.0 0.640486 0.0 5.170902 4.632574 4.893273