Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01400 ATGGATTCTCAGCTTCTAAATCAGCGCCCAATTTCGTCTATTCTCATCATAATCGCTATGCAGACCGAAGCGCTTCCTTTGGTGGATAAGTTTCAACTTAAGGAAGATGTTAGCTCTGTGTTTCCAAAGGAGGTTCCCTGGGTTCGTTATCATGGGATTTACAAAAATCTTGAGATCAATTTAATTTGGCCTGGAAAGGATTTGGCCTTGGGGGTTGATAGCGTGGGCACAATTTCGGCTTCGCTCGTAACCTATGCTTCTGTCCAAGCATTGCAACCAGACCTGATTATCAATGCAGGCACTGCTGGTGGTTTTAAGGCAAAAGGAGCGATTATTGGCGATGTCTTTCTGGTATCCGAGTGTGCTTTCCATGACAGACGTATACCTATTCCAGTTTTCGATTTATATGGAGTCGGATCGAAGCAAGCAATGTCGACACCCAATCTCCTTAAGGAGCTTGATCTAAAGGTTGGAAAATTATCAACCGGTGACTCGCTAGACATATCTGCACAGGATGAAGCATCGATTCTAGCTAACGATGCCACGGTTAAAGATATGGAGGGAGCAGCAATTGCCTATGTAGCAGATATCTTCAAAGTTCCTGCAATATTTGTAAAAGCTGTTACTGATATCGTCGATGGCGAAAAACCGACTGCAGAAGAATTCTTGCAGAATTTGGCCACAGTTTCTGCAGCACTGGATCAAGCAGTTACACAAGTTGTAAATTTCATCAGTGGAAAGTGCATTCATGAACTTTGA 759 43.21 MDSQLLNQRPISSILIIIAMQTEALPLVDKFQLKEDVSSVFPKEVPWVRYHGIYKNLEINLIWPGKDLALGVDSVGTISASLVTYASVQALQPDLIINAGTAGGFKAKGAIIGDVFLVSECAFHDRRIPIPVFDLYGVGSKQAMSTPNLLKELDLKVGKLSTGDSLDISAQDEASILANDATVKDMEGAAIAYVADIFKVPAIFVKAVTDIVDGEKPTAEEFLQNLATVSAALDQAVTQVVNFISGKCIHEL 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9204575 9209173 - CmaCh11G014000.1 Cma11g01400 303909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01400 252 PANTHER 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE 1 7 252 IPR044580 GO:0008930|GO:0019509
Cma11g01400 252 SUPERFAMILY Purine and uridine phosphorylases 5 232 IPR035994 GO:0003824|GO:0009116
Cma11g01400 252 Gene3D Nucleoside phosphorylase domain 3 252 IPR035994 GO:0003824|GO:0009116
Cma11g01400 252 Pfam Phosphorylase superfamily 14 241 IPR000845 GO:0003824|GO:0009116
Cma11g01400 252 CDD MTAN 14 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01400 K01244 MTN; 5'-methylthioadenosine nucleosidase [EC:3.2.2.16] - csv:101204791 434.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01400 Cma19g00722 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01400 Cma-Chr11:9204575 Cma19g00722 Cma-Chr19:7305160 5.04E-161 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g93 . . . . . . . . Cmo19g00731 Cmo11g01721 . . . . . . . . . . . . . . . . . . . . . Cone12ag1206 Cone8ag1258 . . . . . . . . Bda15g01046 . . . Bma03g00590 . . . . Cma11g01400 Cma19g00722 . Car19g00549 . . . . . . . . . . . . . . . . Lsi11g01177 . Chy01g00700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012224 2 1 1 1 0 1 2 1 1 1 0 1 2 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01400 Cma_Chr11 FPKM 6.279315 6.950184 363.125702 383.528107 11.891194 9.415984 10.796892 52.257069 52.797321 52.83992