Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01402 ATGGCTTTTGGGTATGTTTATCCTGCTTATGAATGCTACAAGATTGTGGAGAGGAGCCCATTAGAGATACTCCAGCTTTTGTTTTGGTGCCATTTTTGGATCATAGTTGCTATGCTTACAGTGTTGGAGAAAGTGGGAGACCCTTTGATTTCATGGTTGCCGCTGTACAATGAAGCAAAGCTGGCATTCTTCATATATCTTTGGCATCCTAAAACAAAAGGAGCAGCAAGTATGTTCGACTTCGTTCTTCGACCATTCATAGCGAAACACGAAGCGAAAATCGATCATTACCTGGTCGAACTAAGTACCAAGACAGCAGATATCGCAACCTTGTTTTGGCATAAAACAACAAGTTGCAGCCAAACGACATTACTCGACTTGCTGCATAATGTTTCGTCTCTGCCCACGTCACAGACTCATCGTCGTAATCAGAATCTCAAGGATGAAACTGAATTAGCAGCAGCAGAGGCAACAGAACCTGTATCAACTATGGAAAATAGAGTTGCAGATGATTCAAAGAAGAAGGTAAGTTTTGATGAACTATCAACGAAACCGAAACGTCGAAAACGACGATTTTCTAGCTTGTTTTGTGCAAAATGA 600 41.33 MAFGYVYPAYECYKIVERSPLEILQLLFWCHFWIIVAMLTVLEKVGDPLISWLPLYNEAKLAFFIYLWHPKTKGAASMFDFVLRPFIAKHEAKIDHYLVELSTKTADIATLFWHKTTSCSQTTLLDLLHNVSSLPTSQTHRRNQNLKDETELAAAEATEPVSTMENRVADDSKKKVSFDELSTKPKRRKRRFSSLFCAK 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9216280 9218124 - CmaCh11G014020.1 Cma11g01402 303911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01402 199 MobiDBLite consensus disorder prediction 166 186 - -
Cma11g01402 199 MobiDBLite consensus disorder prediction 155 199 - -
Cma11g01402 199 PANTHER HVA22-LIKE PROTEIN 1 165 - -
Cma11g01402 199 Pfam TB2/DP1, HVA22 family 8 86 IPR004345 -
Cma11g01402 199 PANTHER HVA22-LIKE PROTEINS 1 165 IPR004345 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01402 K17338 REEP1_2_3_4; receptor expression-enhancing protein 1/2/3/4 - csv:101204068 291.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00300 Cma-Chr5:1297261 Cma11g01402 Cma-Chr11:9216280 2.39E-52 dispersed
Cma11g01402 Cma-Chr11:9216280 Cma14g00343 Cma-Chr14:1521797 7.83E-43 dispersed
Cma11g01402 Cma-Chr11:9216280 Cma09g00110 Cma-Chr9:478691 5.40E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g86 . . . . . . . . . Cmo11g01719 . . . . Sed01g2489 Cpe04g00571 . Bhi05g01757 Tan02g2062 Cmetu03g2203 . Hepe02g0449 . . Cla02g00452 Cam02g0460 Cec02g0459 Cco02g0478 Clacu02g0461 . Cre02g0790 . . . Cone10ag1188 . Csa07g00073 . . Blo04g00549 . . Bda14g00597 Bpe15g00831 . Bma03g00589 . . . . Cma11g01402 . . . . . . . . . . . . . . . . . . . Lsi11g01174 . Chy01g00703 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012735 1 2 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01402 Cma_Chr11 FPKM 0.0 0.0 0.0 0.0 1.067838 1.212338 0.0 0.0 0.440464 0.288502