Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01405 ATGTGGCTGCAGAAAGGAAACAGCGTGAATGGCACGAAAAAGGGAGGAATAGCAGGAAGAGGAAATGGATTGGTGGCGATCGGCGTTGACAGGGAAAAAGGAAGCCAAAATGCTCTCCGATGGGCCACCGAGCATCTGCTCGTCAAGGGTCAAACCGTGATATTAATCCATGTAGTTCAGAGGCCTTCCAGTGCGGCAGCTTATTTGATTGGGGGAGCCATTATTTGTAATAGCGATGGCAGTTTCGCCAGTAATTCCCCTCGTAAACAGCAGCTCGAGATGCAGACTCGTGACATTTTTCTCACCTTCCATTGCTATTGTACCCGTAAGGACATTCAATGCCTTGATGTCATATTGGAAGATACTGATGTGGTGAAAGCGTTAACCGAATACGTCTCGTATAGTGCAATCGACAACTTGGTGCTTGGGGCTCCATCGAAACATGGATTTATTAGGTTTAAGTCGTCGAGCATGGGGAGTAGTGTGTCGAAAGGGGCACCGGATTTCTGCACTGTATATGTCATCACAAAGGGAAAGGTGTCGTCGGTGAGACATGCCACTCGCTTGGCTCCCGCTGCTTCTCCTTTACTAGACCATTTGCAGAAGTTATCGAAGCCGATCGTAAAGGGAACGGTCACTCCTCAACATAAGTTTAATTTAAGAGATAGGACATCATTCAAGCCTCGTAATTTTCAAGATGAATCAATCAAGCCAGAAATATCTCAGGGAGTGGATCGAACTTCTATTTCCAAATATAGTGGAGGGTTCTCCGAGTCAGAATCCGACATATCCTTCATAAGCTCAGGAAGACCAAGCACGGATCGTACTTCTTCTGTTGCACTTGACAATGAATCCGCCCCACTGCAATATTCAAACAGCTCAGACCAAAGCTTTGCATCTCTACCATTTAAACCAAAATGGACAGACCACAATCAACTCAATGATTTCTCATCAGTTTCAGATGAGAGCTGCAGGACATCATTTTCCTGTTCTTCTCAGAACTTGGATGAAGCAGAGCTTGAAATGAAGAGGTTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCTTGTAAAGAAGCACTAACAGCAAAGCAAAAGGCAAGGGAACTAAATAACTGGAGATGTGAAGAAGAACAGAAACTAGAAGAGGCGCGGCTTGCACAAGAAGCAGCAATGGCTATTGCAGAGAAGGAGAGAGCGAGATGCCGAGCGGCGATGGAAGCAGCTGATGCAGCTAAGAAAATAGCTGAGTTAGAATCATATAAAAGAGCAAATCTAGAGATAGAAGCACTTAAAGAAGCAGAGGAAATGCAAAGAGCATTGAAAAATCTTGCACAAAGTGACATCAGATACAGGAGATATTCAATTGAGGAGATTGAATCAGCAACAGAAAATTTTGCACAATCTCGGAAGATAGGGGAAGGAGGTTATGGACCTGTTTTTCATTGTCGTCTTGATCACACATCGGTTGCGGTCAAGGTTTTGCGCCCTGATGCGACTCAAGGAAGGGAACAATTTCAGCGAGAGATTGATATATTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTTGGAGCATGCCCAGAATATGGCATTCTAGTGTACGAGCACATGTCGAACGGAAGTTTGGAGGATCGACTCTTTCGAAAGGGGAACACCCCTGCTATTCCTTGGCAGTACCGGTTTCGAATTGCTGCTGAGATTGCTACTGGCCTTCTGTTTCTCCACCAGACCAAACCAGAGCCATTAGTGCACCGTGATCTCAAGCCAGCTAACATATTGCTAGACTACAATTATGTTAGCAAAATAAGCGACGTTGGTTTGGCTAGACTTGTACCCGCCGTGGCCGAAAATGTAACACAATGCTACATGACTTCAGCTGCTGGAACTTTCTGCTATATAGACCCTGAATATCAACAGACTGGAATGCTTGGGGTTAAATCTGATGTCTACTCATTAGGTATCATGTTGCTTCAACTAATTACAGCCAAGCCGCCCATGGGGTTGGCTCACCGAATTGCTCGAGCTATTGAGAAGGGGACTTTGGCGGATTTTCTGGACCCAGCTGTGGATGATTGGCCAGTGGAACAAGCACTTTGCTTTGCAAAATTAGCACTTCAATGTGCAGAACTTAGACGAAAAGACAGACCAGATCTTGCCAATGTTTTGTTGCCAGAACTTAACAGATTGAGAGAGTTTGGTGAGGAGAGAATGGAGCATCTGTTGTCAATGGATAGATGTAATGAGCGATCCACAACTACTGATGATTTCAGGAAGTTCGAAGAGCCAATCTAG 2307 44.82 MWLQKGNSVNGTKKGGIAGRGNGLVAIGVDREKGSQNALRWATEHLLVKGQTVILIHVVQRPSSAAAYLIGGAIICNSDGSFASNSPRKQQLEMQTRDIFLTFHCYCTRKDIQCLDVILEDTDVVKALTEYVSYSAIDNLVLGAPSKHGFIRFKSSSMGSSVSKGAPDFCTVYVITKGKVSSVRHATRLAPAASPLLDHLQKLSKPIVKGTVTPQHKFNLRDRTSFKPRNFQDESIKPEISQGVDRTSISKYSGGFSESESDISFISSGRPSTDRTSSVALDNESAPLQYSNSSDQSFASLPFKPKWTDHNQLNDFSSVSDESCRTSFSCSSQNLDEAELEMKRLKLELKQTMEMYSTACKEALTAKQKARELNNWRCEEEQKLEEARLAQEAAMAIAEKERARCRAAMEAADAAKKIAELESYKRANLEIEALKEAEEMQRALKNLAQSDIRYRRYSIEEIESATENFAQSRKIGEGGYGPVFHCRLDHTSVAVKVLRPDATQGREQFQREIDILSCIRHPNMVLLLGACPEYGILVYEHMSNGSLEDRLFRKGNTPAIPWQYRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDYNYVSKISDVGLARLVPAVAENVTQCYMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPPMGLAHRIARAIEKGTLADFLDPAVDDWPVEQALCFAKLALQCAELRRKDRPDLANVLLPELNRLREFGEERMEHLLSMDRCNERSTTTDDFRKFEEPI 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9232327 9238715 + CmaCh11G014050.1 Cma11g01405 303914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01405 768 Gene3D Phosphorylase Kinase; domain 1 447 541 - -
Cma11g01405 768 MobiDBLite consensus disorder prediction 247 278 - -
Cma11g01405 768 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 26 175 - -
Cma11g01405 768 CDD STK_N 24 178 - -
Cma11g01405 768 Pfam Universal stress protein family 27 167 IPR006016 -
Cma11g01405 768 Gene3D HUPs 24 175 IPR014729 -
Cma11g01405 768 Coils Coil 381 401 - -
Cma11g01405 768 Coils Coil 421 450 - -
Cma11g01405 768 PANTHER BNAA05G18880D PROTEIN 20 747 - -
Cma11g01405 768 Coils Coil 328 355 - -
Cma11g01405 768 Pfam Protein kinase domain 470 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01405 768 PANTHER OS02G0152300 PROTEIN 20 747 - -
Cma11g01405 768 SUPERFAMILY Protein kinase-like (PK-like) 451 727 IPR011009 -
Cma11g01405 768 Gene3D Transferase(Phosphotransferase) domain 1 542 753 - -
Cma11g01405 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Cma11g01405 768 SMART serkin_6 469 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01405 768 ProSiteProfiles Protein kinase domain profile. 469 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01585 Cma-Chr1:10935651 Cma11g01405 Cma-Chr11:9232327 0 dispersed
Cma05g00620 Cma-Chr5:3113792 Cma11g01405 Cma-Chr11:9232327 0 dispersed
Cma09g00539 Cma-Chr9:2408437 Cma11g01405 Cma-Chr11:9232327 0 dispersed
Cma11g01405 Cma-Chr11:9232327 Cma12g00277 Cma-Chr12:1436928 0 dispersed
Cma11g01405 Cma-Chr11:9232327 Cma19g00714 Cma-Chr19:7264273 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68916 PF00069 Pkinase 5.90E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01405 - - csv:101202855 1226.85