Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01416 ATGGAGCGCAGTTTTCTGTACAAGGAATTCGCTCCATTGATCGGAATGATCGCCGGCGAGTGCGCTACCGTCGGCTCCAACACCGTCTACAAAGCCATTAGCGGCCATCAAATTAGCTTCTATGTCTTCACCTTCTACACTTGCCTCGCCGCCGCTCTCGTTCTTCTTCCTTTCGCCTTCATCTTCCGCAGATCCGGCGTTTTTCCGTCCAATAAATCCTCGTTCTTCCTGAGACTGATCTGCCTCTCCGCCATGGGGTACGATTTGAGAGTTGGATGTCAGCTGTTTTCCTATAAAGGATTGGAGTACAGTTCACCGACGCTTGCTTCCGCCATTAGCAACCTAATTCCTGCTCTCACTTTCATCTTGGCCGTTCTCTTCGGGATGGAGAAGCTAGCTTTGAAAAGCTCAAGCAGCACGGCGAAAATCGTTGGCTCGGCAGTGTCTATAGCAGGTGCACTTGTAGTGGTTCTTTATAAAGGTCCAGTCATTCTATCAAACCCATTTGCTGCGCCAACAAGGTTGAATCTTTCACATCCTTTGGCCTCTTCCCAACCCAATTGGATCATGGGTGGCCTCTGCTTTTTTGCTCAGTACCTTCTCAACTCTTTCTGGTACATTATTCTGACCCAAATGGTGAACATGTATCCAGATGAACTAGCAGTGGTGTGCTTGTACTATGTTTTCGAGGTCATAATAGCTGCACCCATATGCCTATTAGCAGAAGGAAACTTGGGTGCATGGAAGCTAAAAAACAGTCTTGAATTGGTCGCTGTTTTGAACTCGGGATGTGTGGGTCAATCCTTCGTCTCTGCCATCCACACATGGGGTGTCCATGTCAAAGGGCCTGTTTATGTTTCGAGTTTCAGGCCTCTCTCAATTGCCATTGCGGCTGCTACTGGTGTCATTTTCCTTGGGGATGATCTCTATCTTGGAAGAGCGAGCCAGAGAGAGATGGAGAGGAGCTTGTTTTACAAAGACGTGGTGCCATTCGCCGCCATGGTTGCAGCCGAGTGCGCCACCGTGGGATCCAACACAGGCTTCAAAGCTGCCACCGCCAGAGGCATGAGCTACTACGTCTTCACCCTCTATGTCTGCGTCGCCGCCGCCGTCGTCCTCATCCCTTTCGCTCTCATCTTTCACAGGCACTCTGTTTCTCTCTCTGCCTCTCTCTCCGCTTATAAATCGATTCATTTCCCTAATTCCTCAACCTCTCTCTCTCTCTCTCTGTCTCTGCAGATCGCAACAGCTTCCGCCGAACAAGATTTCCCTGTTCTTCAAACTCGTCGCCCTCTCCGCCCTCGGGCTTGGAGTTCAGCTCCCCCACTCTTTCATCCGCCATTAGCAACCTCATCCCGGCGTTCACTTTCATTCTTGCCGTCTTTTTCCGTCGATCCAACATCATTGACCACTGGGGAGGTCGTCGGAGGTGGGGTGGTGACGATGGTGGCAATAACCGTCGTCGAAGGTGGGCGGGCAGTGCTAGTGATAGTGGAAGTAACGATGGAGGCTCTGCGTCAAAGAGGGCGTAGTGGAAGTGAAGCTGGAGTGATGGAAAAGATAGATTTGAAACGGAGCAGCAGCATAGCCAAAATTGTGGGGTCAGCGGTGTCGATATCAGGTGCATTGGTAGTGGTTCTGTACAAAGGCCCAATTGTGATATCAAACCCATATTCTCAAGGCCCAAAAGAATTGGGCCTTCTCTATCACAATCACAATCAACCTTTGGGCTCTTCACATCCACAGCCCAATTGGATATTGGGTGGCCTTTGCTTTGTTTTTCAATACCTTTCCAACTCCTTTTGGTACATTCTCCAGACCCAAATCATAAAGATATACCCAGATGAGGTAACAGTGGTGGCAGTGTACTACAGCATCCAGGCAGTTTTAACGGCGCCGGTGTGTTTGTTGGCAGAAACAGACATGGATGCTTGGAAGATGACAAATGCACTAAGCTTTGTGTTCATACTGAACTCGGGTATGATGGGTCAGGCCTTTGTGGCTGCTATCCACACTTGGGGACTCAACTTGAAGGGGCCTGTTTATGTGTCCAGTTTTAGGCCATTGTCCATTGCCATTGCTGCTGCTATGGGTGCCATTCTTCTTGCTGATGATCTTCATCTTGGAAGAGCTCGTAAAGATGTTCATTTGTTCTGTAGAGCTCGTAGAGACTCCGCAAATTTGTAG 2187 49.34 MERSFLYKEFAPLIGMIAGECATVGSNTVYKAISGHQISFYVFTFYTCLAAALVLLPFAFIFRRSGVFPSNKSSFFLRLICLSAMGYDLRVGCQLFSYKGLEYSSPTLASAISNLIPALTFILAVLFGMEKLALKSSSSTAKIVGSAVSIAGALVVVLYKGPVILSNPFAAPTRLNLSHPLASSQPNWIMGGLCFFAQYLLNSFWYIILTQMVNMYPDELAVVCLYYVFEVIIAAPICLLAEGNLGAWKLKNSLELVAVLNSGCVGQSFVSAIHTWGVHVKGPVYVSSFRPLSIAIAAATGVIFLGDDLYLGRASQREMERSLFYKDVVPFAAMVAAECATVGSNTGFKAATARGMSYYVFTLYVCVAAAVVLIPFALIFHRHSVSLSASLSAYKSIHFPNSSTSLSLSLSLQIATASAEQDFPVLQTRRPLRPRAWSSAPPLFHPPLATSSRRSLSFLPSFSVDPTSLTTGEVVGGGVVTMVAITVVEGGRAVLVIVEVTMEALRQRGRSGSEAGVMEKIDLKRSSSIAKIVGSAVSISGALVVVLYKGPIVISNPYSQGPKELGLLYHNHNQPLGSSHPQPNWILGGLCFVFQYLSNSFWYILQTQIIKIYPDEVTVVAVYYSIQAVLTAPVCLLAETDMDAWKMTNALSFVFILNSGMMGQAFVAAIHTWGLNLKGPVYVSSFRPLSIAIAAAMGAILLADDLHLGRARKDVHLFCRARRDSANL 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9307080 9322885 - CmaCh11G014160.1 Cma11g01416 303925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01416 728 PANTHER WAT1-RELATED PROTEIN 328 384 IPR030184 GO:0016021|GO:0022857
Cma11g01416 728 PANTHER WAT1-RELATED PROTEIN 518 710 IPR030184 GO:0016021|GO:0022857
Cma11g01416 728 Pfam EamA-like transporter family 21 157 IPR000620 GO:0016020|GO:0016021
Cma11g01416 728 PANTHER WAT1-RELATED PROTEIN 12 313 IPR030184 GO:0016021|GO:0022857
Cma11g01416 728 PANTHER WAT1-RELATED PROTEIN 328 384 - -
Cma11g01416 728 PANTHER WAT1-RELATED PROTEIN 518 710 - -
Cma11g01416 728 PANTHER WAT1-RELATED PROTEIN 12 313 - -
Cma11g01416 728 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01416 Cma-Chr11:9307080 Cma04g00292 Cma-Chr4:1449636 2.57E-21 dispersed
Cma11g01416 Cma-Chr11:9307080 Cma15g00320 Cma-Chr15:1487220 6.03E-40 wgd
Cma11g01416 Cma-Chr11:9307080 Cma18g00826 Cma-Chr18:7215575 2.48E-15 wgd
Cma11g01416 Cma-Chr11:9307080 Cma04g02720 Cma-Chr4:18350626 1.43E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01416 - - csv:101211416 535.798