Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01423 | ATGGAATCCGGCCGGTTCTTGTTCAATCCCCCGGCTTGCGGCGGCAACATGCTTTGCCTTGGCGGGGCCGGTGGTGGCGATCGTTTTCTGCGAGAAGGAAGAACAATGATGAGCATGAGCATGAACATGAGCATGCAAGAGAGTTCAAAGGGGAGACCGTTTTTCAGATCCCCTGATGATCTTTACGACGATGAATATTACGACGAGCTTTACCCCGAGAAGAAGCGCCGTTTGGCCAATGAGCAGGTTCAAATGCTGGAGAAGAGTTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTAGCCAAGAAGCTGGGGCTGCAGCCAAGGCAGGTGGCCGTGTGGTTCCAGAACCGCCGTGCCCGGTGGAAGACGAAGCAACTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTATGTCAAACTATGACTCCATTGTCAAAGAGAATGCGGTGCTTAAATCTGAGGTGGCTTCCTTGACTGAGAAATGTGTAGCTAAAGAGCTTGATGGAGGAGAAGCACCAATTCCATGTACGACTTCGGAGCCTCTTCGAGCAGACACTGCCCACGTCTCTGCCCCACACTCCGGTGGCTCCGGGAGAAAGGCTGAAGATCGTCTAAGTTCAGGGAGCGATAGCAGTGCAGTGATTGACGATAATTGTCTACAACTCATCGACAGTGGCGATTCTTACTTCCCGAGTAATGAGTATCCTCTACCTCCTGGGCTGCAAATGGAACATGATGACAGGAATTATAATAGCAATTACTTGTTCTCAGATATGTTTGCAGAAACAAACCAACAGAACCAGGAGGGGGGGCCTCCAGCTTGGTGGGCATGGCCTTAG | 864 | 50.35 | MESGRFLFNPPACGGNMLCLGGAGGGDRFLREGRTMMSMSMNMSMQESSKGRPFFRSPDDLYDDEYYDELYPEKKRRLANEQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIVKENAVLKSEVASLTEKCVAKELDGGEAPIPCTTSEPLRADTAHVSAPHSGGSGRKAEDRLSSGSDSSAVIDDNCLQLIDSGDSYFPSNEYPLPPGLQMEHDDRNYNSNYLFSDMFAETNQQNQEGGPPAWWAWP | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9382874 | 9384802 | - | CmaCh11G014230.1 | Cma11g01423 | 303932 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01423 | 287 | CDD | homeodomain | 74 | 130 | IPR001356 | GO:0003677 | |
Cma11g01423 | 287 | SMART | HOX_1 | 72 | 133 | IPR001356 | GO:0003677 | |
Cma11g01423 | 287 | ProSiteProfiles | 'Homeobox' domain profile. | 69 | 129 | IPR001356 | GO:0003677 | |
Cma11g01423 | 287 | Pfam | Homeobox associated leucine zipper | 129 | 169 | IPR003106 | GO:0006355|GO:0043565 | |
Cma11g01423 | 287 | Gene3D | - | 69 | 135 | - | - | |
Cma11g01423 | 287 | ProSitePatterns | 'Homeobox' domain signature. | 104 | 127 | IPR017970 | GO:0000981|GO:0006355 | |
Cma11g01423 | 287 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 243 | IPR045224 | GO:0003700 | |
Cma11g01423 | 287 | Pfam | Homeodomain | 74 | 127 | IPR001356 | GO:0003677 | |
Cma11g01423 | 287 | PRINTS | Lambda-repressor HTH signature | 100 | 109 | IPR000047 | GO:0003677 | |
Cma11g01423 | 287 | PRINTS | Lambda-repressor HTH signature | 109 | 125 | IPR000047 | GO:0003677 | |
Cma11g01423 | 287 | MobiDBLite | consensus disorder prediction | 195 | 220 | - | - | |
Cma11g01423 | 287 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 | 1 | 243 | - | - | |
Cma11g01423 | 287 | SUPERFAMILY | Homeodomain-like | 70 | 131 | IPR009057 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01423 | Cma15g00329 | CCT | |
Cma04g02715 | Cma11g01423 | CCT | |
Cma11g01423 | Cma14g00644 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00431 | Cma-Chr6:1992141 | Cma11g01423 | Cma-Chr11:9382874 | 4.35E-30 | dispersed | |
Cma11g01423 | Cma-Chr11:9382874 | Cma13g00928 | Cma-Chr13:7361934 | 1.65E-41 | dispersed | |
Cma16g00728 | Cma-Chr16:3829042 | Cma11g01423 | Cma-Chr11:9382874 | 7.77E-37 | dispersed | |
Cma11g01423 | Cma-Chr11:9382874 | Cma14g00644 | Cma-Chr14:3207688 | 9.93E-158 | wgd | |
Cma11g01423 | Cma-Chr11:9382874 | Cma15g00329 | Cma-Chr15:1521359 | 1.74E-76 | wgd | |
Cma11g01423 | Cma-Chr11:9382874 | Cma04g02715 | Cma-Chr4:18325430 | 2.60E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35892 | PF00046 | Homeodomain | 2.00E-17 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01423 | K09338 | - | csv:101212142 | 419.083 |