Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01423 ATGGAATCCGGCCGGTTCTTGTTCAATCCCCCGGCTTGCGGCGGCAACATGCTTTGCCTTGGCGGGGCCGGTGGTGGCGATCGTTTTCTGCGAGAAGGAAGAACAATGATGAGCATGAGCATGAACATGAGCATGCAAGAGAGTTCAAAGGGGAGACCGTTTTTCAGATCCCCTGATGATCTTTACGACGATGAATATTACGACGAGCTTTACCCCGAGAAGAAGCGCCGTTTGGCCAATGAGCAGGTTCAAATGCTGGAGAAGAGTTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTAGCCAAGAAGCTGGGGCTGCAGCCAAGGCAGGTGGCCGTGTGGTTCCAGAACCGCCGTGCCCGGTGGAAGACGAAGCAACTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTATGTCAAACTATGACTCCATTGTCAAAGAGAATGCGGTGCTTAAATCTGAGGTGGCTTCCTTGACTGAGAAATGTGTAGCTAAAGAGCTTGATGGAGGAGAAGCACCAATTCCATGTACGACTTCGGAGCCTCTTCGAGCAGACACTGCCCACGTCTCTGCCCCACACTCCGGTGGCTCCGGGAGAAAGGCTGAAGATCGTCTAAGTTCAGGGAGCGATAGCAGTGCAGTGATTGACGATAATTGTCTACAACTCATCGACAGTGGCGATTCTTACTTCCCGAGTAATGAGTATCCTCTACCTCCTGGGCTGCAAATGGAACATGATGACAGGAATTATAATAGCAATTACTTGTTCTCAGATATGTTTGCAGAAACAAACCAACAGAACCAGGAGGGGGGGCCTCCAGCTTGGTGGGCATGGCCTTAG 864 50.35 MESGRFLFNPPACGGNMLCLGGAGGGDRFLREGRTMMSMSMNMSMQESSKGRPFFRSPDDLYDDEYYDELYPEKKRRLANEQVQMLEKSFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLMSNYDSIVKENAVLKSEVASLTEKCVAKELDGGEAPIPCTTSEPLRADTAHVSAPHSGGSGRKAEDRLSSGSDSSAVIDDNCLQLIDSGDSYFPSNEYPLPPGLQMEHDDRNYNSNYLFSDMFAETNQQNQEGGPPAWWAWP 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9382874 9384802 - CmaCh11G014230.1 Cma11g01423 303932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01423 287 CDD homeodomain 74 130 IPR001356 GO:0003677
Cma11g01423 287 SMART HOX_1 72 133 IPR001356 GO:0003677
Cma11g01423 287 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Cma11g01423 287 Pfam Homeobox associated leucine zipper 129 169 IPR003106 GO:0006355|GO:0043565
Cma11g01423 287 Gene3D - 69 135 - -
Cma11g01423 287 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Cma11g01423 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 243 IPR045224 GO:0003700
Cma11g01423 287 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Cma11g01423 287 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Cma11g01423 287 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Cma11g01423 287 MobiDBLite consensus disorder prediction 195 220 - -
Cma11g01423 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 243 - -
Cma11g01423 287 SUPERFAMILY Homeodomain-like 70 131 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01423 Cma15g00329 CCT
Cma04g02715 Cma11g01423 CCT
Cma11g01423 Cma14g00644 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00431 Cma-Chr6:1992141 Cma11g01423 Cma-Chr11:9382874 4.35E-30 dispersed
Cma11g01423 Cma-Chr11:9382874 Cma13g00928 Cma-Chr13:7361934 1.65E-41 dispersed
Cma16g00728 Cma-Chr16:3829042 Cma11g01423 Cma-Chr11:9382874 7.77E-37 dispersed
Cma11g01423 Cma-Chr11:9382874 Cma14g00644 Cma-Chr14:3207688 9.93E-158 wgd
Cma11g01423 Cma-Chr11:9382874 Cma15g00329 Cma-Chr15:1521359 1.74E-76 wgd
Cma11g01423 Cma-Chr11:9382874 Cma04g02715 Cma-Chr4:18325430 2.60E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35892 PF00046 Homeodomain 2.00E-17 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01423 K09338 - csv:101212142 419.083