Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01430 ATGTCGACGGCATCGCTTAACACTGCCTGCCTTCGCTATCACTCTCTTCCTCTTAACAAATCTTCTTCTTTTCGCCCTTTTGCAAGGCTCAACCCTTCTCCTCCTTCCTTTTCTTCTTCTATCCCTAATCTTATCCAAAACAGGCCTGTTTTTGCTGCCCCATCACCTCTTATCACCCCGACTTGGAGAGAAGACATGGGGAATGGTTCATATGAGGAAGCCATTGAGGCCTTGGAGAAGCTCCTCAGAGAGAAGGGAGATTTGAAAGCAGAAGCAACATCAAAGGTGGAGCAGATAACAGCTGAACTGAAGAGTGGTGGAGAAGCAGCCAAGCCCAGCTATGATGCTGTTGACAGACTCAAATCTGAATTGTATGGTGAACTTGCCAAGGGCCAAAGCCCCAAGTTCATGGTGTTTGCTTGCTCTGATTCAAGAGTTTGCCCATCTCATGTTCTTGATTTCCAACCAGGGGAGGCTTTTGTGGTCAGAAATGTAGCCAATTTGGTTCCTCCATATGATCAGAGCAAATTCTCAGGAACTGGATCCGCCATTGAATATGCTGTTCTTCATCTCAAGGTTCAATACATTGTTGTGATCGGTCACAGTGCTTGTGGTGGTATTAAAGGGCTCATGACCTTTCCATTTGATGGAAAATACTCAACTGATTTCATTGAAGAATGGGTGAAAATTGGCTTGCCTGCTAAGGCCAAGGTGAAATCAAAGCATGGTGAGGGAGAGCTTGGGGAACTATGCACACACTGTGAAAAGGAAGCAGTTGATGTATCCCTTGGGAATCTCTTGACCTATCCATTTGTTAGGGATGGTTTGGTGAATGGAACTCTTGGACTCAAGGGTGGTCACTACGACTTCGTTAAAGGAACTTTCGAGCTCTGGGGACTCGATTTCAGCTTTAGTCCGTCTATTTCTGTATGA 933 45.55 MSTASLNTACLRYHSLPLNKSSSFRPFARLNPSPPSFSSSIPNLIQNRPVFAAPSPLITPTWREDMGNGSYEEAIEALEKLLREKGDLKAEATSKVEQITAELKSGGEAAKPSYDAVDRLKSELYGELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQSKFSGTGSAIEYAVLHLKVQYIVVIGHSACGGIKGLMTFPFDGKYSTDFIEEWVKIGLPAKAKVKSKHGEGELGELCTHCEKEAVDVSLGNLLTYPFVRDGLVNGTLGLKGGHYDFVKGTFELWGLDFSFSPSISV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9421355 9427161 - CmaCh11G014300.1 Cma11g01430 303939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01430 310 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 141 148 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cma11g01430 310 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 185 205 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cma11g01430 310 PANTHER CARBONIC ANHYDRASE 1 310 IPR001765 GO:0004089|GO:0008270
Cma11g01430 310 PANTHER BETA CARBONIC ANHYDRASE 2, CHLOROPLASTIC 1 310 - -
Cma11g01430 310 SUPERFAMILY beta-carbonic anhydrase, cab 121 306 IPR036874 GO:0004089|GO:0008270
Cma11g01430 310 SMART Pro_CA_2 129 299 IPR001765 GO:0004089|GO:0008270
Cma11g01430 310 Coils Coil 71 98 - -
Cma11g01430 310 Pfam Carbonic anhydrase 137 294 IPR001765 GO:0004089|GO:0008270
Cma11g01430 310 Gene3D Carbonic anhydrase 74 310 IPR036874 GO:0004089|GO:0008270
Cma11g01430 310 CDD beta_CA_cladeB 122 298 IPR045066 GO:0004089|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01430 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - csv:101213998 482.256
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01430 Cma14g00650 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01731 Cma-Chr4:8703199 Cma11g01430 Cma-Chr11:9421355 2.18E-114 dispersed
Cma11g01430 Cma-Chr11:9421355 Cma12g00197 Cma-Chr12:915950 2.47E-52 dispersed
Cma11g01430 Cma-Chr11:9421355 Cma14g00650 Cma-Chr14:3241654 0 wgd
Cma11g01430 Cma-Chr11:9421355 Cma18g00800 Cma-Chr18:7030407 4.18E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g29 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00489 . . . . . . . . . . . Csa07g00030 . Cme01g01350 . Blo13g00536 . . . . . . . . . Cma11g01430 . . . . . . . . . . . . . . . . . . . . . Chy01g00748 .
Vvi14g1354 . . Bda01g01275 . Bpe02g01492 . . . Cmo14g00665 Cmo11g01691 Cma11g01430 Cma14g00650 Car11g01376 Car14g00590 . Cpe03g00563 . . . . . . . . Cla10g01352 Cam10g1257 Cec10g1433 Cco10g1407 Clacu10g1410 Cmu10g2180 Cre10g1563 . . Cone2ag0129 Cone16ag0926 . Csa05g02338 Chy04g01458 Cme04g01888 . Blo18g00336 . . . . Bma01g00979 . . . . . . . . . . Bhi11g01650 . . . Hepe02g1824 . . . . . . . . . . Csa03g03938 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003899 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 9 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01430 Cma_Chr11 FPKM 0.0 0.0 1.142261 1.020982 617.039551 628.939148 642.149536 0.0 0.0 0.0