Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01431 | ATGGCGGTTCTGCCTCTGCAGCAGCTTCCTTGTGTGAGGACTATTGACAGTTCGTCTTCGCCATTGTTGAGAGGAGGTAAATCGTCGTTGTTTTGGGGAAGACATTTGCGCTTTGGAATTGGAGGTATTAGGGATGGTCCGGGAGTGAAAGCTGGATTCAATGGTCGAGGTTTTGAGGTTTTCGCCATGTCGGATGGCTCTTCTTCTTCGTATAAGATGAATCTCAATGAGTACTTGGTTACTCTCCAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTGCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCGAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCGAGCGATTCTTCTGGCGTCAAGCTCGTTGAGATCAAAGACTTTGGAGATACACAGATGATGCTGAAGGAGAAAGCAGGGTCTTTTAGCCTGGTTCTTGAAAGACCTTTCACTCCTTTTCCGATTCAACATCTTCTGCTTTCAAATGATTTAGATATTTTATTTAATCGAGGTCGAGTACCTATTGCTACTTGGAAGAAAGAAGTTTTGGCTGTACAAACATCTGATGCAAACTGTGGGAATTCTGGCTTTGCAACTTTCTCCTCTAAGTTCTCAACATCATTAGGTTGGAAACTTCTAAATAATCAAAATGGAGATGTTAAATCACCCATGCAGAGAAACATTCTCACGCCTCAGATCAGCCAGGTTGTTTGTATATTTACTGAAGAGGATCCTGGAGAAGGAGAATGGGCTCATGGGAGCTTTCCCATAGACGAATATGTCAAGGCATTAGAACGGTCTAGAGGGGAGCTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGGTCATGTTTACAGACTGAAGCAGATGTTGAGGCTTTGTCAAATAATGTGGGAATCACCGCAGTTCTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGGGGATTAGCTCCAAGTTAATCAATGAGTCGTGCCAAAAATATGATATTCTCATGATCAACTATCCTATTAGGGAAGGAGATTCTTATGATACGAGGAAAAAACTACCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTGTAACTTGTACCACCGGTTTTGATCGAGCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACAGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCAGCAATTGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAACATGGAAGGCACGATGGACCTCCCACTCACGCCGTTACTTTTGTATGGAATGGTCAAGAGGGGGAGGATGTAAATTTGGTGGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCAAGATATGAAGTAGAAATGAAACTTCCTCAAGGGAAGTATTACTACAAGTACATCACAAATGGTCAGTGGAGGCATTCAACAGCTTCGCCTGCTGAAAGGGATGATAGGGGGAATGTCAACAATGTTATAGTCATTGGCGACACTGCCAGTGTCAGGCCTTCAGTTCAACCGCAAAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCACTTACAGAAAATGAGAGGTTTATGTTGGCGAAAGCGGCTCGTTGTGTTGCATTTTCGGTATGTCCAATTAGACTAACTCCCAAGTAA | 1773 | 43.26 | MAVLPLQQLPCVRTIDSSSSPLLRGGKSSLFWGRHLRFGIGGIRDGPGVKAGFNGRGFEVFAMSDGSSSSYKMNLNEYLVTLQKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLVEIKDFGDTQMMLKEKAGSFSLVLERPFTPFPIQHLLLSNDLDILFNRGRVPIATWKKEVLAVQTSDANCGNSGFATFSSKFSTSLGWKLLNNQNGDVKSPMQRNILTPQISQVVCIFTEEDPGEGEWAHGSFPIDEYVKALERSRGELYYDHSRGMSYSKITEQIYVGSCLQTEADVEALSNNVGITAVLNFQSATEAENWGISSKLINESCQKYDILMINYPIREGDSYDTRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRAPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVEHGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK | 590 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9430644 | 9437518 | - | CmaCh11G014310.1 | Cma11g01431 | 303940 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01431 | 590 | SUPERFAMILY | E set domains | 454 | 537 | IPR014756 | - | |
Cma11g01431 | 590 | SUPERFAMILY | PDZ domain-like | 64 | 165 | IPR036034 | GO:0005515 | |
Cma11g01431 | 590 | Gene3D | Immunoglobulins | 444 | 540 | IPR013783 | - | |
Cma11g01431 | 590 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 290 | 449 | IPR020422 | GO:0006470|GO:0008138 | |
Cma11g01431 | 590 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 57 | 589 | - | - | |
Cma11g01431 | 590 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 282 | 428 | IPR029021 | - | |
Cma11g01431 | 590 | Gene3D | Protein tyrosine phosphatase superfamily | 283 | 549 | IPR029021 | - | |
Cma11g01431 | 590 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 57 | 589 | IPR030066 | GO:0005983 | |
Cma11g01431 | 590 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 457 | 538 | IPR032640 | - | |
Cma11g01431 | 590 | ProSiteProfiles | PDZ domain profile. | 79 | 160 | IPR001478 | GO:0005515 | |
Cma11g01431 | 590 | Pfam | Dual specificity phosphatase, catalytic domain | 305 | 422 | IPR000340 | GO:0008138|GO:0016311 | |
Cma11g01431 | 590 | CDD | E_set_AMPKbeta_like_N | 457 | 536 | - | - | |
Cma11g01431 | 590 | CDD | DSP_laforin-like | 289 | 435 | IPR045204 | GO:0019203|GO:0046838 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01431 | Cma-Chr11:9430644 | Cma18g00926 | Cma-Chr18:7932424 | 8.72E-29 | dispersed | |
Cma11g01431 | Cma-Chr11:9430644 | Cma04g01404 | Cma-Chr4:7177887 | 1.28E-30 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01431 | - | - | cmos:111435043 | 1172.92 |