Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01431 ATGGCGGTTCTGCCTCTGCAGCAGCTTCCTTGTGTGAGGACTATTGACAGTTCGTCTTCGCCATTGTTGAGAGGAGGTAAATCGTCGTTGTTTTGGGGAAGACATTTGCGCTTTGGAATTGGAGGTATTAGGGATGGTCCGGGAGTGAAAGCTGGATTCAATGGTCGAGGTTTTGAGGTTTTCGCCATGTCGGATGGCTCTTCTTCTTCGTATAAGATGAATCTCAATGAGTACTTGGTTACTCTCCAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTGCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCGAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCGAGCGATTCTTCTGGCGTCAAGCTCGTTGAGATCAAAGACTTTGGAGATACACAGATGATGCTGAAGGAGAAAGCAGGGTCTTTTAGCCTGGTTCTTGAAAGACCTTTCACTCCTTTTCCGATTCAACATCTTCTGCTTTCAAATGATTTAGATATTTTATTTAATCGAGGTCGAGTACCTATTGCTACTTGGAAGAAAGAAGTTTTGGCTGTACAAACATCTGATGCAAACTGTGGGAATTCTGGCTTTGCAACTTTCTCCTCTAAGTTCTCAACATCATTAGGTTGGAAACTTCTAAATAATCAAAATGGAGATGTTAAATCACCCATGCAGAGAAACATTCTCACGCCTCAGATCAGCCAGGTTGTTTGTATATTTACTGAAGAGGATCCTGGAGAAGGAGAATGGGCTCATGGGAGCTTTCCCATAGACGAATATGTCAAGGCATTAGAACGGTCTAGAGGGGAGCTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACAGAGCAAATTTATGTGGGGTCATGTTTACAGACTGAAGCAGATGTTGAGGCTTTGTCAAATAATGTGGGAATCACCGCAGTTCTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGGGGATTAGCTCCAAGTTAATCAATGAGTCGTGCCAAAAATATGATATTCTCATGATCAACTATCCTATTAGGGAAGGAGATTCTTATGATACGAGGAAAAAACTACCATTTTGTGTGGGCCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTGTAACTTGTACCACCGGTTTTGATCGAGCTCCAGCAAGTGTGATTGCATATCTACACTGGATGACAGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCAGCAATTGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAACATGGAAGGCACGATGGACCTCCCACTCACGCCGTTACTTTTGTATGGAATGGTCAAGAGGGGGAGGATGTAAATTTGGTGGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCAAGATATGAAGTAGAAATGAAACTTCCTCAAGGGAAGTATTACTACAAGTACATCACAAATGGTCAGTGGAGGCATTCAACAGCTTCGCCTGCTGAAAGGGATGATAGGGGGAATGTCAACAATGTTATAGTCATTGGCGACACTGCCAGTGTCAGGCCTTCAGTTCAACCGCAAAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCACTTACAGAAAATGAGAGGTTTATGTTGGCGAAAGCGGCTCGTTGTGTTGCATTTTCGGTATGTCCAATTAGACTAACTCCCAAGTAA 1773 43.26 MAVLPLQQLPCVRTIDSSSSPLLRGGKSSLFWGRHLRFGIGGIRDGPGVKAGFNGRGFEVFAMSDGSSSSYKMNLNEYLVTLQKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLVEIKDFGDTQMMLKEKAGSFSLVLERPFTPFPIQHLLLSNDLDILFNRGRVPIATWKKEVLAVQTSDANCGNSGFATFSSKFSTSLGWKLLNNQNGDVKSPMQRNILTPQISQVVCIFTEEDPGEGEWAHGSFPIDEYVKALERSRGELYYDHSRGMSYSKITEQIYVGSCLQTEADVEALSNNVGITAVLNFQSATEAENWGISSKLINESCQKYDILMINYPIREGDSYDTRKKLPFCVGLLLRLLKKNHRVFVTCTTGFDRAPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVEHGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9430644 9437518 - CmaCh11G014310.1 Cma11g01431 303940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01431 590 SUPERFAMILY E set domains 454 537 IPR014756 -
Cma11g01431 590 SUPERFAMILY PDZ domain-like 64 165 IPR036034 GO:0005515
Cma11g01431 590 Gene3D Immunoglobulins 444 540 IPR013783 -
Cma11g01431 590 ProSiteProfiles Dual specificity protein phosphatase domain profile. 290 449 IPR020422 GO:0006470|GO:0008138
Cma11g01431 590 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 57 589 - -
Cma11g01431 590 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 282 428 IPR029021 -
Cma11g01431 590 Gene3D Protein tyrosine phosphatase superfamily 283 549 IPR029021 -
Cma11g01431 590 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 57 589 IPR030066 GO:0005983
Cma11g01431 590 Pfam Glycogen recognition site of AMP-activated protein kinase 457 538 IPR032640 -
Cma11g01431 590 ProSiteProfiles PDZ domain profile. 79 160 IPR001478 GO:0005515
Cma11g01431 590 Pfam Dual specificity phosphatase, catalytic domain 305 422 IPR000340 GO:0008138|GO:0016311
Cma11g01431 590 CDD E_set_AMPKbeta_like_N 457 536 - -
Cma11g01431 590 CDD DSP_laforin-like 289 435 IPR045204 GO:0019203|GO:0046838
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01431 Cma-Chr11:9430644 Cma18g00926 Cma-Chr18:7932424 8.72E-29 dispersed
Cma11g01431 Cma-Chr11:9430644 Cma04g01404 Cma-Chr4:7177887 1.28E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01431 - - cmos:111435043 1172.92