Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01450 ATGTCTTCTTCCACCTACTCCAATTCTCCTTGTGCAGCTTGCAAGTTCCTACGTCGAAAATGTCTCCCGAACTGCGTTTTCGCGCTGTATTTCCCGTCGGAGGAGCCTCAAAAGTTCGCCAATGTCCACAAGATCTTCGGAGCAAGCAATGTCAGCAAATTACTAAACGAAGTCCAGCCACACCAACGGGAGGACGCCGTGAACTCGCTCGCTTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTCGGCGCCATCTCGATCCTTCAAAGACAAGTCATCAAGCTTCAAAGAGAACTCGACGCTACCAACGCAAACCTCATTCGCTACGCCTGCAGTGAACTCCCCGCCCCGTCGTCGTCACAGTATGCTCGGAGATCGTCGTCGACAAGCCACATCGGAAGCTCGTCGACCTCTAGCTATGGGCATTACTATTCTGGCCTCTACTTTTGTGACCCTTGTGGAGATGACCATGACAAAGGAGAAGAACACAAGTAA 507 52.66 MSSSTYSNSPCAACKFLRRKCLPNCVFALYFPSEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQRELDATNANLIRYACSELPAPSSSQYARRSSSTSHIGSSSTSSYGHYYSGLYFCDPCGDDHDKGEEHK 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9563056 9563562 - CmaCh11G014500.1 Cma11g01450 303959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01450 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 141 - -
Cma11g01450 168 Coils Coil 89 109 - -
Cma11g01450 168 MobiDBLite consensus disorder prediction 122 141 - -
Cma11g01450 168 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cma11g01450 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 141 - -
Cma11g01450 168 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02687 Cma11g01450 CCT
Cma04g02687 Cma11g01450 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01450 Cma-Chr11:9563056 Cma13g00866 Cma-Chr13:7097857 1.01E-59 dispersed
Cma10g00105 Cma-Chr10:429384 Cma11g01450 Cma-Chr11:9563056 2.64E-68 wgd
Cma11g00077 Cma-Chr11:374968 Cma11g01450 Cma-Chr11:9563056 1.59E-66 wgd
Cma11g01450 Cma-Chr11:9563056 Cma04g02687 Cma-Chr4:18208584 6.22E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35894 PF03195 LOB 2.60E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01450 - - cpep:111792844 306.99