Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01457 ATGGAGTCACTCGTTGATGGTATGAGTTCTTTACTTAAAACTCAGAACCCGACATCTACAGTGAGGATTCTCGATTCGTCACGCCACCTTTCTGCTAAACAATCAAGGGATGAAGCCAGTTCTTCGACATCCTACGTTACATCTCAGAATTGTGCCAAGAAACCTGTTCGTCATCCAAATGGTTCTTCTGTAAGTATTAAAAAACAACCCGATTCGCAGCTTGAAGGTTCAACTGATGTGAAAAATCATACACATGTTTCCAATAAGGGGAAATCTGAGCTTGTAAACCCGATGGATGTTTCGTATAAGTCGACTGAAACTTCTTTTCAGAAGAAGGTTCCTTTGGAGGGAGGTGGAGCAAAACCTCTTGTGAAGCATATTATTGAAGATTCTAAGGATTGTTGTTCAAGTGGTTTGGAAGAATCTGGAAATCGAGTATTAAACGCATCGAAAGGAGATTCCACAAAAACAAATGATCAACAAAAGTCTCAGCCAGATGAAATTTCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACGTTATATGCCGAGGCCAAACAAAGTTTCTCAAACACGGAAGTCAGTGAATGTGCAAGCAGTATTAAAAAGTCTTGTGAAAGCATCGACATCACAAGTTCCTACGATCTCGACAAAAGCAGGAAAACAAGTGTTTACCGAGGCAGTACCGGCAGTGATATCAGTGATGAGAGCAACTCGAGTAGTTTAAGCAATGCCATGTATAAGCCCCATAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGGTCTCATGATGGGATGTTAGGACTGAATCATTTCAGGTTGCTGCGGAGACTGGGATGTGGCGATATCGGTAGTGTCTATCTTTCGGAGTTAACTGGTACCAAAACTTATTTTGCAATGAAGGTTATGGATAAAGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACCGAGCGCGAGATATTGCAATCTCTGGATCATCCTTTCCTTCCTACTTTGTATACACACTTCGAGACAGAGAAGTTCTCTTGCTTGGTAATGGAGTTTTGCCCAGGAGGCGACTTGCACGCGCTTAGGCAGAGGCAACCCGGAAATTTTTTCCCGGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTTCTTGCATTGGAGTATCTGCACATGCTTGGGATAATCTATAGGGACCTAAAACCTGAAAATGTGTTGGTTAGAGATGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCGGTTTCCCCTACCCTTGTTAAGTCATCAAACACGGGTTTAGAATCTAAAAGCTCGGGCTACTGCGCTCAGCCTGCTTGCATTGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCGTGTTTTACGCCTCGCTTCCTAAGCAGGCACAGGAAAGAAAAAAAGTCGAAACCAAAGAGTGAAGTATATCATCAAGTGAGCCCTCTACCTGAGCTCATTGCTGAGCCCACAAGTGCGAGATCGATGTCCTTTGTCGGTACACATGAGTACCTCGCACCTGAAATCATAAAAGGTGAGGGTCATGGCAGTGCTGTGGATTGGTGGACTTTCGGGATCTTTCTCTACGAGCTTTTGTTCGGTAGAACGCCATTCAAGGGAGCTGGGAACCGAGCTACTTTGTTTAATGTAGTTGGTCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCAGAGGCTTGCTCGTAAAAGAACCACAGCACCGTCTCGCTTATAGGCGTGGTGCTACCGAGATCAAACAACATCCGTTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGTGCCAATCCTCCAGAAGTGCCAAGAGTAGATGCCATTGATTTCTCTTCAAGAATGGAGACACCACACGCACCGGCAGGCGAAAAAACGCCGGGAGTCGATGTGAAACCTTCAGAAGTGTCCTGCTATGGTTTCATTATTTTTAACTCGCTTAGTAACTGTGTACTGTGGCGCGCATTTATTTTCCATTTTCTCCCCGGCGACACGGCGGTGACACGGCGGCGCCACCTAAGAAGTGAAGATATGCGATTATGGCGTCCCAATCGTTCCCTTTCATCCGTTGGCGAAAATCTGCGTGAATCTCTCTTTTTCTTCCGTTCTCCGAAGCTATCCTCTTCGTACCTAATCTCGTCGCCGATCTTACTCCACTCCTCGGAATCTCACCGTGTCTCCACATTTTCAACTGCCGAAGACGAGAAGTATGGCTTCCGTCGGCCGGAGATGTATGGGAGAAGCCTTTCCGGAACCGTTGGTGCTTACGAGCGCCACGTGTTCCTCTGCTATCGAAGCCATGAGGTCTGGCCGTCCCGTGTTGAAGGCTCGGACGCTGATCTGCTACCTAAACTCCTTTCCTCAGCCATAAAAACTCGTGAAAACGAAATTTCTGTTAAGACAAAGCTGACGATATGCGAGGCAGGGGAGGGAGCTGAGCATTCAGATGGAGATGTATTGGTTTTTCCGGATATGCTCAAATACAGTCGAGATAAAAGATGTGGTGTTTGTGGAACAGCTCTCATTACAAAACTTACAGAGGAGATTGAACTAAGAGGACTAGAGGATCAGATTTGTGTACATGCGTGTTCACATATTGGTGGACACAAGTATGCTGGAAACGTGATTGTTTTTAGTCCAGATCTAGATGGGAGAATCATGGGCCATTGGGGTCGAATGGGGAGAATCAATGATGAGGAAGGTAAAAAAGTTGATGAAGACAAAATTCCTAGTGCTGAAGTCTCCAAGGAAACTAAGAACAAACCTTGGGAGAATGACATCCAGGGCAACAATTAG 2871 45.66 MESLVDGMSSLLKTQNPTSTVRILDSSRHLSAKQSRDEASSSTSYVTSQNCAKKPVRHPNGSSVSIKKQPDSQLEGSTDVKNHTHVSNKGKSELVNPMDVSYKSTETSFQKKVPLEGGGAKPLVKHIIEDSKDCCSSGLEESGNRVLNASKGDSTKTNDQQKSQPDEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIKKSCESIDITSSYDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGNFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNTGLESKSSGYCAQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDAIDFSSRMETPHAPAGEKTPGVDVKPSEVSCYGFIIFNSLSNCVLWRAFIFHFLPGDTAVTRRRHLRSEDMRLWRPNRSLSSVGENLRESLFFFRSPKLSSSYLISSPILLHSSESHRVSTFSTAEDEKYGFRRPEMYGRSLSGTVGAYERHVFLCYRSHEVWPSRVEGSDADLLPKLLSSAIKTRENEISVKTKLTICEAGEGAEHSDGDVLVFPDMLKYSRDKRCGVCGTALITKLTEEIELRGLEDQICVHACSHIGGHKYAGNVIVFSPDLDGRIMGHWGRMGRINDEEGKKVDEDKIPSAEVSKETKNKPWENDIQGNN 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9603199 9616271 + CmaCh11G014570.1 Cma11g01457 303966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01457 956 MobiDBLite consensus disorder prediction 1 95 - -
Cma11g01457 956 SMART serkin_6 276 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01457 956 PANTHER FLIPPASE KINASE 1-RELATED 14 660 - -
Cma11g01457 956 Gene3D Transferase(Phosphotransferase) domain 1 360 428 - -
Cma11g01457 956 CDD STKc_phototropin_like 275 635 - -
Cma11g01457 956 MobiDBLite consensus disorder prediction 923 956 - -
Cma11g01457 956 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 14 660 - -
Cma11g01457 956 MobiDBLite consensus disorder prediction 224 247 - -
Cma11g01457 956 MobiDBLite consensus disorder prediction 142 174 - -
Cma11g01457 956 ProSiteProfiles Protein kinase domain profile. 276 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01457 956 Gene3D Glutaredoxin 851 942 - -
Cma11g01457 956 SUPERFAMILY Protein kinase-like (PK-like) 251 633 IPR011009 -
Cma11g01457 956 Gene3D Phosphorylase Kinase; domain 1 274 359 - -
Cma11g01457 956 MobiDBLite consensus disorder prediction 36 81 - -
Cma11g01457 956 Gene3D Transferase(Phosphotransferase) domain 1 507 630 - -
Cma11g01457 956 MobiDBLite consensus disorder prediction 923 948 - -
Cma11g01457 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Cma11g01457 956 Pfam Protein kinase domain 277 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01457 956 Pfam Protein kinase domain 509 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01457 956 Pfam Sucrase/ferredoxin-like 854 926 IPR009737 -
Cma11g01457 956 MobiDBLite consensus disorder prediction 222 247 - -
Cma11g01457 956 MobiDBLite consensus disorder prediction 8 28 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01457 Cma15g00360 CCT
Cma04g02682 Cma11g01457 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01457 Cma-Chr11:9603199 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma20g00692 Cma-Chr20:3167759 Cma11g01457 Cma-Chr11:9603199 3.88E-110 dispersed
Cma11g01457 Cma-Chr11:9603199 Cma14g00672 Cma-Chr14:3423555 0 wgd
Cma11g01457 Cma-Chr11:9603199 Cma15g00360 Cma-Chr15:1652049 3.04E-57 wgd
Cma11g01457 Cma-Chr11:9603199 Cma04g02682 Cma-Chr4:18189496 2.83E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68919 PF00069 Pkinase 1.80E-35 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01457 K08286 - csv:101219962 1190.64