Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01457 | ATGGAGTCACTCGTTGATGGTATGAGTTCTTTACTTAAAACTCAGAACCCGACATCTACAGTGAGGATTCTCGATTCGTCACGCCACCTTTCTGCTAAACAATCAAGGGATGAAGCCAGTTCTTCGACATCCTACGTTACATCTCAGAATTGTGCCAAGAAACCTGTTCGTCATCCAAATGGTTCTTCTGTAAGTATTAAAAAACAACCCGATTCGCAGCTTGAAGGTTCAACTGATGTGAAAAATCATACACATGTTTCCAATAAGGGGAAATCTGAGCTTGTAAACCCGATGGATGTTTCGTATAAGTCGACTGAAACTTCTTTTCAGAAGAAGGTTCCTTTGGAGGGAGGTGGAGCAAAACCTCTTGTGAAGCATATTATTGAAGATTCTAAGGATTGTTGTTCAAGTGGTTTGGAAGAATCTGGAAATCGAGTATTAAACGCATCGAAAGGAGATTCCACAAAAACAAATGATCAACAAAAGTCTCAGCCAGATGAAATTTCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACGTTATATGCCGAGGCCAAACAAAGTTTCTCAAACACGGAAGTCAGTGAATGTGCAAGCAGTATTAAAAAGTCTTGTGAAAGCATCGACATCACAAGTTCCTACGATCTCGACAAAAGCAGGAAAACAAGTGTTTACCGAGGCAGTACCGGCAGTGATATCAGTGATGAGAGCAACTCGAGTAGTTTAAGCAATGCCATGTATAAGCCCCATAAGGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGGTCTCATGATGGGATGTTAGGACTGAATCATTTCAGGTTGCTGCGGAGACTGGGATGTGGCGATATCGGTAGTGTCTATCTTTCGGAGTTAACTGGTACCAAAACTTATTTTGCAATGAAGGTTATGGATAAAGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACCGAGCGCGAGATATTGCAATCTCTGGATCATCCTTTCCTTCCTACTTTGTATACACACTTCGAGACAGAGAAGTTCTCTTGCTTGGTAATGGAGTTTTGCCCAGGAGGCGACTTGCACGCGCTTAGGCAGAGGCAACCCGGAAATTTTTTCCCGGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTTCTTGCATTGGAGTATCTGCACATGCTTGGGATAATCTATAGGGACCTAAAACCTGAAAATGTGTTGGTTAGAGATGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCGGTTTCCCCTACCCTTGTTAAGTCATCAAACACGGGTTTAGAATCTAAAAGCTCGGGCTACTGCGCTCAGCCTGCTTGCATTGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCGTGTTTTACGCCTCGCTTCCTAAGCAGGCACAGGAAAGAAAAAAAGTCGAAACCAAAGAGTGAAGTATATCATCAAGTGAGCCCTCTACCTGAGCTCATTGCTGAGCCCACAAGTGCGAGATCGATGTCCTTTGTCGGTACACATGAGTACCTCGCACCTGAAATCATAAAAGGTGAGGGTCATGGCAGTGCTGTGGATTGGTGGACTTTCGGGATCTTTCTCTACGAGCTTTTGTTCGGTAGAACGCCATTCAAGGGAGCTGGGAACCGAGCTACTTTGTTTAATGTAGTTGGTCAGCCATTGAGATTTCCAGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCAGAGGCTTGCTCGTAAAAGAACCACAGCACCGTCTCGCTTATAGGCGTGGTGCTACCGAGATCAAACAACATCCGTTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGTGCCAATCCTCCAGAAGTGCCAAGAGTAGATGCCATTGATTTCTCTTCAAGAATGGAGACACCACACGCACCGGCAGGCGAAAAAACGCCGGGAGTCGATGTGAAACCTTCAGAAGTGTCCTGCTATGGTTTCATTATTTTTAACTCGCTTAGTAACTGTGTACTGTGGCGCGCATTTATTTTCCATTTTCTCCCCGGCGACACGGCGGTGACACGGCGGCGCCACCTAAGAAGTGAAGATATGCGATTATGGCGTCCCAATCGTTCCCTTTCATCCGTTGGCGAAAATCTGCGTGAATCTCTCTTTTTCTTCCGTTCTCCGAAGCTATCCTCTTCGTACCTAATCTCGTCGCCGATCTTACTCCACTCCTCGGAATCTCACCGTGTCTCCACATTTTCAACTGCCGAAGACGAGAAGTATGGCTTCCGTCGGCCGGAGATGTATGGGAGAAGCCTTTCCGGAACCGTTGGTGCTTACGAGCGCCACGTGTTCCTCTGCTATCGAAGCCATGAGGTCTGGCCGTCCCGTGTTGAAGGCTCGGACGCTGATCTGCTACCTAAACTCCTTTCCTCAGCCATAAAAACTCGTGAAAACGAAATTTCTGTTAAGACAAAGCTGACGATATGCGAGGCAGGGGAGGGAGCTGAGCATTCAGATGGAGATGTATTGGTTTTTCCGGATATGCTCAAATACAGTCGAGATAAAAGATGTGGTGTTTGTGGAACAGCTCTCATTACAAAACTTACAGAGGAGATTGAACTAAGAGGACTAGAGGATCAGATTTGTGTACATGCGTGTTCACATATTGGTGGACACAAGTATGCTGGAAACGTGATTGTTTTTAGTCCAGATCTAGATGGGAGAATCATGGGCCATTGGGGTCGAATGGGGAGAATCAATGATGAGGAAGGTAAAAAAGTTGATGAAGACAAAATTCCTAGTGCTGAAGTCTCCAAGGAAACTAAGAACAAACCTTGGGAGAATGACATCCAGGGCAACAATTAG | 2871 | 45.66 | MESLVDGMSSLLKTQNPTSTVRILDSSRHLSAKQSRDEASSSTSYVTSQNCAKKPVRHPNGSSVSIKKQPDSQLEGSTDVKNHTHVSNKGKSELVNPMDVSYKSTETSFQKKVPLEGGGAKPLVKHIIEDSKDCCSSGLEESGNRVLNASKGDSTKTNDQQKSQPDEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIKKSCESIDITSSYDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGNFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNTGLESKSSGYCAQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDAIDFSSRMETPHAPAGEKTPGVDVKPSEVSCYGFIIFNSLSNCVLWRAFIFHFLPGDTAVTRRRHLRSEDMRLWRPNRSLSSVGENLRESLFFFRSPKLSSSYLISSPILLHSSESHRVSTFSTAEDEKYGFRRPEMYGRSLSGTVGAYERHVFLCYRSHEVWPSRVEGSDADLLPKLLSSAIKTRENEISVKTKLTICEAGEGAEHSDGDVLVFPDMLKYSRDKRCGVCGTALITKLTEEIELRGLEDQICVHACSHIGGHKYAGNVIVFSPDLDGRIMGHWGRMGRINDEEGKKVDEDKIPSAEVSKETKNKPWENDIQGNN | 956 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9603199 | 9616271 | + | CmaCh11G014570.1 | Cma11g01457 | 303966 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01457 | 956 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
Cma11g01457 | 956 | SMART | serkin_6 | 276 | 612 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01457 | 956 | PANTHER | FLIPPASE KINASE 1-RELATED | 14 | 660 | - | - | |
Cma11g01457 | 956 | Gene3D | Transferase(Phosphotransferase) domain 1 | 360 | 428 | - | - | |
Cma11g01457 | 956 | CDD | STKc_phototropin_like | 275 | 635 | - | - | |
Cma11g01457 | 956 | MobiDBLite | consensus disorder prediction | 923 | 956 | - | - | |
Cma11g01457 | 956 | PANTHER | SERINE/THREONINE-PROTEIN KINASE D6PKL3 | 14 | 660 | - | - | |
Cma11g01457 | 956 | MobiDBLite | consensus disorder prediction | 224 | 247 | - | - | |
Cma11g01457 | 956 | MobiDBLite | consensus disorder prediction | 142 | 174 | - | - | |
Cma11g01457 | 956 | ProSiteProfiles | Protein kinase domain profile. | 276 | 612 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01457 | 956 | Gene3D | Glutaredoxin | 851 | 942 | - | - | |
Cma11g01457 | 956 | SUPERFAMILY | Protein kinase-like (PK-like) | 251 | 633 | IPR011009 | - | |
Cma11g01457 | 956 | Gene3D | Phosphorylase Kinase; domain 1 | 274 | 359 | - | - | |
Cma11g01457 | 956 | MobiDBLite | consensus disorder prediction | 36 | 81 | - | - | |
Cma11g01457 | 956 | Gene3D | Transferase(Phosphotransferase) domain 1 | 507 | 630 | - | - | |
Cma11g01457 | 956 | MobiDBLite | consensus disorder prediction | 923 | 948 | - | - | |
Cma11g01457 | 956 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 397 | 409 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01457 | 956 | Pfam | Protein kinase domain | 277 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01457 | 956 | Pfam | Protein kinase domain | 509 | 612 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01457 | 956 | Pfam | Sucrase/ferredoxin-like | 854 | 926 | IPR009737 | - | |
Cma11g01457 | 956 | MobiDBLite | consensus disorder prediction | 222 | 247 | - | - | |
Cma11g01457 | 956 | MobiDBLite | consensus disorder prediction | 8 | 28 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01457 | Cma15g00360 | CCT | |
Cma04g02682 | Cma11g01457 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01457 | Cma-Chr11:9603199 | Cma18g00622 | Cma-Chr18:5507489 | 0 | dispersed | |
Cma20g00692 | Cma-Chr20:3167759 | Cma11g01457 | Cma-Chr11:9603199 | 3.88E-110 | dispersed | |
Cma11g01457 | Cma-Chr11:9603199 | Cma14g00672 | Cma-Chr14:3423555 | 0 | wgd | |
Cma11g01457 | Cma-Chr11:9603199 | Cma15g00360 | Cma-Chr15:1652049 | 3.04E-57 | wgd | |
Cma11g01457 | Cma-Chr11:9603199 | Cma04g02682 | Cma-Chr4:18189496 | 2.83E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68919 | PF00069 | Pkinase | 1.80E-35 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01457 | K08286 | - | csv:101219962 | 1190.64 |