Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01458 ATGGATTCTGGTAATGGGTTTTATTCAACTGGTGAATTCAATTTGGATGCCAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCGAAGATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAGTACAAAAATCAGATTGTGGCTATTAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATAGCTAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAACTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTGACCGAATTACTCACAGGTGGAACATTGCGCAAATACCTCTTGAATTTGAGGCCAAGGAGCCTGGAACTTGACGTTGCGATCGGGTTTGCGCTAGATATTGCTCGTGCAGTGGAGTGTTTACACTCCCATGGAATCATTCACCGTGACCTTAAACCAGAGAACTTGATATTGACTGCAGACCATAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTCACAGAGATGATGACTGCAGAAACAGGAACATATAGATGGATGGCTCCAGAGCTCTATAGCACAGTAACTTTAAAACATGGAGATAAAAAGCATTACAATCATAAAGTTGATGCTTACAGCTTTGCCATTGTATTGTGGGAGCTCATTCTTAACAGGTTGCCGTTTGAAGGCATGTCGAATTTACAGGCGGCATACGCAGCTGCTTTTAAGAACATGAGGCCTAGTGCTGAAAATCTTCCAGAAGACTTGGCTTTAATAGTGACATCATGTTGGAGAGAGGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTGCAGTCCCTCTCTAAAATATCACCACGAGCACCTGCGATCCCGCCTCGGATATGTGCTGAAGATGTTGTGATGCCACCCGAATCTCCTGGTACAAATTCCTTGATGGCTGTAAGGCACGGCTCGGGGGAAGCATCACACAGCATGATCGAAGAAAACCCAACAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA 1056 43.75 MDSGNGFYSTGEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERIARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKYLLNLRPRSLELDVAIGFALDIARAVECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSKISPRAPAIPPRICAEDVVMPPESPGTNSLMAVRHGSGEASHSMIEENPTSSFFCFNKCY 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9621175 9625915 + CmaCh11G014580.1 Cma11g01458 303967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01458 351 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Cma11g01458 351 Gene3D Transferase(Phosphotransferase) domain 1 106 298 - -
Cma11g01458 351 SUPERFAMILY Protein kinase-like (PK-like) 17 304 IPR011009 -
Cma11g01458 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Cma11g01458 351 CDD STKc_MAP3K-like 32 286 - -
Cma11g01458 351 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524
Cma11g01458 351 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
Cma11g01458 351 PANTHER PROTEIN KINASE ATN1 1 328 - -
Cma11g01458 351 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Cma11g01458 351 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Cma11g01458 351 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Cma11g01458 351 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Cma11g01458 351 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01458 351 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01458 351 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02680 Cma11g01458 CCT
Cma04g02680 Cma11g01458 ECH
Cma11g01458 Cma14g00675 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01458 Cma-Chr11:9621175 Cma14g00018 Cma-Chr14:75726 7.70E-146 dispersed
Cma10g00092 Cma-Chr10:373193 Cma11g01458 Cma-Chr11:9621175 0 wgd
Cma11g00066 Cma-Chr11:334910 Cma11g01458 Cma-Chr11:9621175 4.61E-128 wgd
Cma11g01458 Cma-Chr11:9621175 Cma14g00675 Cma-Chr14:3434476 0 wgd
Cma11g01458 Cma-Chr11:9621175 Cma04g02680 Cma-Chr4:18179202 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68920 PF07714 PK_Tyr_Ser-Thr 4.00E-56 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01458 - - csv:101219563 659.062