Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01458 | ATGGATTCTGGTAATGGGTTTTATTCAACTGGTGAATTCAATTTGGATGCCAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCGAAGATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAGTACAAAAATCAGATTGTGGCTATTAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATAGCTAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAACTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTGACCGAATTACTCACAGGTGGAACATTGCGCAAATACCTCTTGAATTTGAGGCCAAGGAGCCTGGAACTTGACGTTGCGATCGGGTTTGCGCTAGATATTGCTCGTGCAGTGGAGTGTTTACACTCCCATGGAATCATTCACCGTGACCTTAAACCAGAGAACTTGATATTGACTGCAGACCATAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTCACAGAGATGATGACTGCAGAAACAGGAACATATAGATGGATGGCTCCAGAGCTCTATAGCACAGTAACTTTAAAACATGGAGATAAAAAGCATTACAATCATAAAGTTGATGCTTACAGCTTTGCCATTGTATTGTGGGAGCTCATTCTTAACAGGTTGCCGTTTGAAGGCATGTCGAATTTACAGGCGGCATACGCAGCTGCTTTTAAGAACATGAGGCCTAGTGCTGAAAATCTTCCAGAAGACTTGGCTTTAATAGTGACATCATGTTGGAGAGAGGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTGCAGTCCCTCTCTAAAATATCACCACGAGCACCTGCGATCCCGCCTCGGATATGTGCTGAAGATGTTGTGATGCCACCCGAATCTCCTGGTACAAATTCCTTGATGGCTGTAAGGCACGGCTCGGGGGAAGCATCACACAGCATGATCGAAGAAAACCCAACAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA | 1056 | 43.75 | MDSGNGFYSTGEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERIARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKYLLNLRPRSLELDVAIGFALDIARAVECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSKISPRAPAIPPRICAEDVVMPPESPGTNSLMAVRHGSGEASHSMIEENPTSSFFCFNKCY | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9621175 | 9625915 | + | CmaCh11G014580.1 | Cma11g01458 | 303967 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01458 | 351 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 105 | - | - | |
Cma11g01458 | 351 | Gene3D | Transferase(Phosphotransferase) domain 1 | 106 | 298 | - | - | |
Cma11g01458 | 351 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 304 | IPR011009 | - | |
Cma11g01458 | 351 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 146 | 158 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01458 | 351 | CDD | STKc_MAP3K-like | 32 | 286 | - | - | |
Cma11g01458 | 351 | ProSitePatterns | Protein kinases ATP-binding region signature. | 32 | 57 | IPR017441 | GO:0005524 | |
Cma11g01458 | 351 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 1 | 328 | - | - | |
Cma11g01458 | 351 | PANTHER | PROTEIN KINASE ATN1 | 1 | 328 | - | - | |
Cma11g01458 | 351 | PRINTS | Tyrosine kinase catalytic domain signature | 102 | 115 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01458 | 351 | PRINTS | Tyrosine kinase catalytic domain signature | 140 | 158 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01458 | 351 | PRINTS | Tyrosine kinase catalytic domain signature | 214 | 236 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01458 | 351 | PRINTS | Tyrosine kinase catalytic domain signature | 257 | 279 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01458 | 351 | ProSiteProfiles | Protein kinase domain profile. | 26 | 290 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01458 | 351 | SMART | serkin_6 | 26 | 290 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01458 | 351 | Pfam | Protein tyrosine and serine/threonine kinase | 29 | 286 | IPR001245 | GO:0004672|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02680 | Cma11g01458 | CCT | |
Cma04g02680 | Cma11g01458 | ECH | |
Cma11g01458 | Cma14g00675 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01458 | Cma-Chr11:9621175 | Cma14g00018 | Cma-Chr14:75726 | 7.70E-146 | dispersed | |
Cma10g00092 | Cma-Chr10:373193 | Cma11g01458 | Cma-Chr11:9621175 | 0 | wgd | |
Cma11g00066 | Cma-Chr11:334910 | Cma11g01458 | Cma-Chr11:9621175 | 4.61E-128 | wgd | |
Cma11g01458 | Cma-Chr11:9621175 | Cma14g00675 | Cma-Chr14:3434476 | 0 | wgd | |
Cma11g01458 | Cma-Chr11:9621175 | Cma04g02680 | Cma-Chr4:18179202 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68920 | PF07714 | PK_Tyr_Ser-Thr | 4.00E-56 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01458 | - | - | csv:101219563 | 659.062 |