Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01493 ATGACCTATTTCAGGGGGTTTTCTACGGCGGTGGCCGCGGTGGTGTTGGTGGTTCTCGGTGGTTGTTGCGGCAGAGGACATGGCGTTGTTGATGTTCCAACCGATGAAGCCGGCATCTGTTCTTCTGGTGTCACCATTCATGGTTATAAGTGTCAGGAAATTCAGGTGCAAACAAAAGATGGATATATTTTAAGTGTACAGAGGATCCCAGAAGGTCGATATGAGAGTGACAATGGAGTAAAAAAGCAACCCGTCATCATACAACATGGCGTTCTTGTGACGTCGGTGGCAACAGCCTGTCGCCGACCAGCCACCACCGACATGCATGTCGGTGATAGCAATATAATTCCTTTCTCCTTCTCTACCAAAACAATGACGACCGATTTTACGCAGGACGGGATGACATGGTTGTTGAATTCCCCGGAGCAGAACCTACCGTTGATCCTCGCCGATAAGGGCTACGACGTATGGATCGCCAACACTCGAGGCACTCGCTTCAGCCGTCACCACATCTCCCTCGACCCATCCTCCTCGGCCTTTTGGAACTGGTCGTGGGACGAGCTCGTCATCTACGACCTCCCCGCCGTTTTCGACCACGTCTCCCAAGAAACCGGCCACAAGATTCACTACGTTGGCCATTCATTGGGAACGTTAATACTAATTGCTTCACTGGCGGAGGGGAAGCTGGTGGAGCAGCTGCAGTCGGTGGCGTTTTTGAGCCCCATTGCTTATCTCAGCCACATGACCACCGTTATCGGCGCCGTGGCTGCCCGGTCGTTGTTACCTCAGGTGGGTGACTCTTGGAGTTTTATTGTGAAAATTTCCTCCGTTTCTTCACCGCCGTTACCTTTGTTTGATGCTTCTTGTAGGGTGGCCGTGGGGAACTTTCTAAAATCGTTGTGTTTTCGTCCAAGAGTCAATTGCTATGACTTATTATCTGCTTTCACGGGCCAAAATTGTTGTCTCAATTCATCGACCGTTGAGCTCTTTCTCAAGAACGAACCTCAGTCGACATCGACTAGGAACATGGTTCACTTATCTCAAATTGCTCGATATGGAGTATTGGCGAAGTTCAACTATGAGAGAATGGATTACAACTTGAGACACTACGGAAAAATCAATCCGCCGTTGTATGACCTCTCCAAAATTCCTCGTGACGTTCCGATCTTCATAAGCTACGGGGGTCGGGACGCTCTCTCGGATCTTCGAGACGTGGGTCACCTCCTTGAAATCTTAAAGTCTCACGATGTCGACAAGCTTACTGTCCAGTACATTGAAAACTACGCCCATGCTGATTTTATCATGGGCATCAACGCCAACGACAAACGGAAGCGTCAAATTTCTGCAGCTGTAATCGTTGTGCCAAATCCGCCGGTTTTCGCCGTTGTGTTTCCCGGCCAAATCCGCCGGTTTTCGCCGTTGTGTTTCCCGGCCAATTCCTTCGTCCGACCACCGGTAATCCTTCCGTCGACTTGTCCTCCGATCAGCAGCCATGCCGGAAGAAACCACTTCGATAGATTACGTCATGGAAGCCGCCTCCGGACCTCACTTCTCCGGCCTCCGACTCGACGGGCTTATCTCCTCTCCACCTTCTTCCTCAACTTCTTCTCCCGCTCACCGCTCTTCACTCTCCGCTTCCTCTGCACAGGTGTTTCTGGAGGTACTGCGTCTGGGAAGACGACGGTGTGTGATATGATTATACAGCAACTCCATGATCATAGGGTTGTGCTGGACTCGTTTTACCGCGGGTTGACAGCCGAGGAACTTGAACGCGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTTTGGATTGTGTCGAGAAGCTAAAGAGTGGGCAATCTTACCATGTCCCAATTTATGATTTTAAGACTCATCAACGCTGTGTAGATAGCTTTCGACAGGTAAATGCATCTGATGTTATCATCGTGGAAGGAATTCTTGTTTTCCATGACCAAAGAGTCCGCAATCTCATGAATATGAAGATATTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACCGTAGAAAGGGGCAGAGACATTAACTCCGTTCTTGAACAGTATGCGAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCATCAAAGAAGTATGCTGATGTGATCATACCACGTGGAGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACAAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACGGTCATTCAATCAACATTTCAGATTAGAGGCATGCATACATTAATTCGAGATCGGGACATCTCAAAGCACGATTTTGTTTTCTATTCAGACCGCCTTATACGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCGTTTACTGAAAAACAAGTGGTCACTCCAACAGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATCGTTCGAAGTGGTGAAAGCATGGAAAACGCATTGCGTGCATGTTGCAAAGGGATAAAAATCGGGAAGATTCTGATTCACCGTGAGGGAGATAACGGGAAGCAGCTGATATACGAGAAATTACCCAATGACATATCGGAGCGACATGTCCTACTCCTAGATCCTGTTCTCGCTACCGGTAACTCAGCTAATCAAGCAATTGACCTACTCATACAGAAGGGAGTTCCAGAATCGCACATCATATTCCTCAACTTGATATCTGCCCCGGAGGGAATTCACTGTGTTTGCAAACGATACCCGTTCTTGAAAATTGTCACTTCTGAGATCGACGATGGATTGAACGAAGAGTATCGTGTCGTACCAGGTATGGGTGAATTTGGCGATCGTTACTTTGGAACCGATGATTAG 2895 47.7 MTYFRGFSTAVAAVVLVVLGGCCGRGHGVVDVPTDEAGICSSGVTIHGYKCQEIQVQTKDGYILSVQRIPEGRYESDNGVKKQPVIIQHGVLVTSVATACRRPATTDMHVGDSNIIPFSFSTKTMTTDFTQDGMTWLLNSPEQNLPLILADKGYDVWIANTRGTRFSRHHISLDPSSSAFWNWSWDELVIYDLPAVFDHVSQETGHKIHYVGHSLGTLILIASLAEGKLVEQLQSVAFLSPIAYLSHMTTVIGAVAARSLLPQVGDSWSFIVKISSVSSPPLPLFDASCRVAVGNFLKSLCFRPRVNCYDLLSAFTGQNCCLNSSTVELFLKNEPQSTSTRNMVHLSQIARYGVLAKFNYERMDYNLRHYGKINPPLYDLSKIPRDVPIFISYGGRDALSDLRDVGHLLEILKSHDVDKLTVQYIENYAHADFIMGINANDKRKRQISAAVIVVPNPPVFAVVFPGQIRRFSPLCFPANSFVRPPVILPSTCPPISSHAGRNHFDRLRHGSRLRTSLLRPPTRRAYLLSTFFLNFFSRSPLFTLRFLCTGVSGGTASGKTTVCDMIIQQLHDHRVVLDSFYRGLTAEELERVHEYNFDHPDSFDTEQLLDCVEKLKSGQSYHVPIYDFKTHQRCVDSFRQVNASDVIIVEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRYPFLKIVTSEIDDGLNEEYRVVPGMGEFGDRYFGTDD 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9822021 9831138 + CmaCh11G014930.1 Cma11g01493 304002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01493 964 TIGRFAM udk: uridine kinase 549 743 IPR000764 -
Cma11g01493 964 CDD UMPK 550 743 IPR000764 -
Cma11g01493 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 736 IPR027417 -
Cma11g01493 964 SUPERFAMILY alpha/beta-Hydrolases 45 442 IPR029058 -
Cma11g01493 964 Gene3D - 546 746 IPR027417 -
Cma11g01493 964 PRINTS Uridine kinase signature 689 700 - -
Cma11g01493 964 PRINTS Uridine kinase signature 618 633 - -
Cma11g01493 964 PRINTS Uridine kinase signature 675 685 - -
Cma11g01493 964 PRINTS Uridine kinase signature 546 563 - -
Cma11g01493 964 PRINTS Uridine kinase signature 711 724 - -
Cma11g01493 964 CDD PRTases_typeI 820 935 IPR000836 -
Cma11g01493 964 Pfam Partial alpha/beta-hydrolase lipase region 45 95 IPR006693 GO:0006629
Cma11g01493 964 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 548 961 IPR029930 GO:0004849|GO:0044206
Cma11g01493 964 Gene3D alpha/beta hydrolase 33 451 IPR029058 -
Cma11g01493 964 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Cma11g01493 964 SUPERFAMILY PRTase-like 746 963 IPR029057 -
Cma11g01493 964 Pfam alpha/beta hydrolase fold 149 247 IPR000073 -
Cma11g01493 964 Pfam Uracil phosphoribosyltransferase 761 962 - -
Cma11g01493 964 Pfam Phosphoribulokinase / Uridine kinase family 550 731 IPR006083 GO:0005524|GO:0016301
Cma11g01493 964 Gene3D - 747 962 IPR029057 -
Cma11g01493 964 PANTHER URIDINE KINASE 548 961 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01493 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01561 Cma-Chr4:7931748 Cma11g01493 Cma-Chr11:9822021 2.47E-15 dispersed
Cma10g00269 Cma-Chr10:1195804 Cma11g01493 Cma-Chr11:9822021 2.04E-15 dispersed
Cma11g00239 Cma-Chr11:1218814 Cma11g01493 Cma-Chr11:9822021 8.42E-16 dispersed
Cma11g01493 Cma-Chr11:9822021 Cma18g01072 Cma-Chr18:8867931 1.82E-15 dispersed
Cma16g01201 Cma-Chr16:9129085 Cma11g01493 Cma-Chr11:9822021 4.79E-14 dispersed
Cma19g00207 Cma-Chr19:1366651 Cma11g01493 Cma-Chr11:9822021 6.73E-14 dispersed
Cma01g00388 Cma-Chr1:1943052 Cma11g01493 Cma-Chr11:9822021 0 transposed
Cma02g00058 Cma-Chr2:280083 Cma11g01493 Cma-Chr11:9822021 2.71E-115 transposed
Cma02g00913 Cma-Chr2:5443445 Cma11g01493 Cma-Chr11:9822021 8.34E-07 transposed
Cma03g00404 Cma-Chr3:4441775 Cma11g01493 Cma-Chr11:9822021 1.39E-17 transposed
Cma09g01034 Cma-Chr9:5330654 Cma11g01493 Cma-Chr11:9822021 0 transposed
Cma19g00577 Cma-Chr19:6449714 Cma11g01493 Cma-Chr11:9822021 1.47E-78 transposed
Cma11g01493 Cma-Chr11:9822021 Cma14g00707 Cma-Chr14:3583622 7.75E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1191 . . . Bda13g01653 . Bpe14g00215 . . . . Cma11g01493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma20g00802 CST 76 562 PRT Gene Family AT2G16570 83.4 8.2e-240 827.0
Cma02g00358 CST 68 554 PRT Gene Family AT2G16570 83.2 3.1e-239 825.1
Cma02g00358 CST 70 554 PRT Gene Family AT4G34740 85.0 1.2e-243 839.7
Cma20g00802 CST 82 562 PRT Gene Family AT4G34740 85.1 9.6e-241 830.1
Cma20g00802 CST 60 535 PRT Gene Family AT4G38880 72.7 2.5e-198 689.1
Cma02g00358 CST 26 527 PRT Gene Family AT4G38880 68.3 5.8e-195 677.9
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma15g01143 . 5 97 PRT Gene Family AT4G22570 86.0 2.0e-43 172.2
Cma16g01064 . 5 97 PRT Gene Family AT4G22570 86.0 3.5e-43 171.4
Cma06g00768 . 5 104 PRT Gene Family AT4G22570 78.0 6.6e-42 167.2
Cma05g00145 CST 5 97 PRT Gene Family AT4G22570 80.6 4.0e-39 157.9
Cma12g00594 CST 81 171 PRT Gene Family AT4G22570 81.3 1.5e-38 156.0
Cma12g00344 CCT,ECH 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cma15g01143 . 1 96 PRT Gene Family AT4G12440 83.3 2.5e-40 161.8
Cma06g00768 . 1 96 PRT Gene Family AT4G12440 81.3 1.3e-39 159.5
Cma16g01064 . 1 96 PRT Gene Family AT4G12440 81.3 1.6e-39 159.1
Cma12g00594 CST 75 170 PRT Gene Family AT4G12440 78.1 2.0e-37 152.1
Cma05g00145 CST 1 96 PRT Gene Family AT4G12440 78.1 3.4e-37 151.4
Cma12g00344 CCT,ECH 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma04g02471 . 1 184 PRT Gene Family AT1G71750 65.1 1.2e-68 256.9
Cma09g01034 . 60 512 PRT Gene Family AT1G55810 85.2 2.9e-224 775.0
Cma01g00388 . 19 482 PRT Gene Family AT1G55810 73.8 1.1e-199 693.3
Cma11g01493 . 550 964 PRT Gene Family AT1G55810 79.2 5.4e-194 674.5
Cma09g01034 . 109 511 PRT Gene Family AT3G27440 76.9 1.6e-184 642.9
Cma01g00388 . 80 482 PRT Gene Family AT3G27440 74.4 1.9e-177 619.4
Cma11g01493 . 565 964 PRT Gene Family AT3G27440 74.7 2.5e-177 619.0
Cma01g00388 . 1 482 PRT Gene Family AT3G27190 85.7 2.1e-244 842.0
Cma11g01493 . 550 964 PRT Gene Family AT3G27190 88.5 3.8e-222 768.1
Cma09g01034 . 47 511 PRT Gene Family AT3G27190 72.7 4.7e-204 708.0
Cma03g00404 . 4 286 PRT Gene Family AT3G53900 67.7 6.0e-109 391.3
Cma09g01034 . 45 512 PRT Gene Family AT4G26510 83.2 2.8e-230 795.0
Cma01g00388 . 11 482 PRT Gene Family AT4G26510 75.0 3.3e-210 728.4
Cma11g01493 . 550 964 PRT Gene Family AT4G26510 81.3 3.0e-203 705.3
Cma01g00388 . 1 482 PRT Gene Family AT5G40870 85.7 4.0e-243 837.8
Cma11g01493 . 550 964 PRT Gene Family AT5G40870 90.4 1.7e-225 779.2
Cma09g01034 . 88 514 PRT Gene Family AT5G40870 78.7 1.1e-203 706.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01493 Cma_Chr11 FPKM 19.365707 19.674623 36.703659 34.510487 9.563491 10.889093 10.825867 26.012655 26.798792 28.701309