Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01498 ATGGGGAAGAACGAATTTCTAACCCCTAAAGCGATAGCAAACAGAATCAAGGCAAAAGGGCTCCAGAAGCTCAGATGGTATTGTCAGATGTGTCAAAAGCAGTGCCGTGATGAAAATGGTTTTAAATGTCACTGTATGAGTGAAAGCCATCAGCGCCAAATGCAGATCTTTGGCCAAAACCCCCATCGTATTGTTGAAGGTTATTCCGAAGAGTTTGAGAGATCTTTTATGGAGCACATTAAGCGTACCCATCGGTTTAGTCGTGTGGCAGCTACAGTGGTCTACAACGAATACATTAATGACAGACATCATATTCATATGAATTCAACGCAGTGGGCTACTCTCACTGAGTTTGTAAAACACTTGGGTCGAACAGGGCAGTGTAAGGTGGACGAGACTCCCAAGGGTTGGTTCATTACTTACATTGATAGAGATTCAGAGACGCTTTTTAAAGAGAAAATGAAAAACAAGAGGATGAGGGCAGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATACAGAAGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTGTATCTGCTGAACCTTTGGAGGCTGAACAAACGAGGGAGTTAAAATTGGATAGTGGTGTTAAGCTTGGATTTTCTGTGGGAACAACATCAAAATTAAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGATGAGAATGGTGAGACTGCCAAGGGGAAACCTGGAGAGACTTCCAAAAACAAGATGGGTAGCGGTGGTCTGTCAGCTTTGGAGGCGTTGATGAGAGAGGAAGAGATGAAGAAGGAGAAGATTAATAGAAAGGATTACTGGCTGTGTGAGGGAATAATTGTGAAGGTCATGAGTAAGAATTTGGCTGAGATGGGATACTATAAACAGAAGGGAGTTGTGCGAAAGGTGATTGATAAATATGTTGGAGAGATTGAAACGCTTGATGGAAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAGTCAGGATAGTGAATGGGGCATATCGTGGATCGAATGCTAGGTTGTTGGGTGTTGACACCGATAAGTTTTGTGCTAAAGTGAAAATAGAAAAGGGTGTATACGATGGCCGGGTGCTTAAGGCTGTTGAATATGAAGATATCTGTAAACTTGCATCATAA 1188 42.26 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFERSFMEHIKRTHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVDETPKGWFITYIDRDSETLFKEKMKNKRMRADLAEEEKQEREIQKQIERAEQLAPLASVSAEPLEAEQTRELKLDSGVKLGFSVGTTSKLKEKGESSRVVFDEDENGETAKGKPGETSKNKMGSGGLSALEALMREEEMKKEKINRKDYWLCEGIIVKVMSKNLAEMGYYKQKGVVRKVIDKYVGEIETLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAKVKIEKGVYDGRVLKAVEYEDICKLAS 395
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 9847324 9848511 + CmaCh11G014980.1 Cma11g01498 304007
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01498 395 MobiDBLite consensus disorder prediction 223 255 - -
Cma11g01498 395 MobiDBLite consensus disorder prediction 223 245 - -
Cma11g01498 395 PANTHER BNAA05G13760D PROTEIN 1 394 - -
Cma11g01498 395 Gene3D - 338 394 IPR014722 -
Cma11g01498 395 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Cma11g01498 395 Coils Coil 154 183 - -
Cma11g01498 395 CDD KOW_KIN17 340 393 IPR041995 -
Cma11g01498 395 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Cma11g01498 395 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 394 IPR037321 -
Cma11g01498 395 SMART Kin17_mid_2 52 178 IPR019447 -
Cma11g01498 395 Coils Coil 257 277 - -
Cma11g01498 395 Pfam KN17 SH3-like C-terminal domain 276 329 IPR041330 -
Cma11g01498 395 Gene3D - 60 160 IPR038254 -
Cma11g01498 395 Gene3D - 284 337 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01498 Cma-Chr11:9847324 Cma19g00187 Cma-Chr19:1238864 2.01E-06 transposed
Cma11g01498 Cma-Chr11:9847324 Cma02g01657 Cma-Chr2:9383133 1.92E-06 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01498 K13102 - csv:101216499 724.931