Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g01498 | ATGGGGAAGAACGAATTTCTAACCCCTAAAGCGATAGCAAACAGAATCAAGGCAAAAGGGCTCCAGAAGCTCAGATGGTATTGTCAGATGTGTCAAAAGCAGTGCCGTGATGAAAATGGTTTTAAATGTCACTGTATGAGTGAAAGCCATCAGCGCCAAATGCAGATCTTTGGCCAAAACCCCCATCGTATTGTTGAAGGTTATTCCGAAGAGTTTGAGAGATCTTTTATGGAGCACATTAAGCGTACCCATCGGTTTAGTCGTGTGGCAGCTACAGTGGTCTACAACGAATACATTAATGACAGACATCATATTCATATGAATTCAACGCAGTGGGCTACTCTCACTGAGTTTGTAAAACACTTGGGTCGAACAGGGCAGTGTAAGGTGGACGAGACTCCCAAGGGTTGGTTCATTACTTACATTGATAGAGATTCAGAGACGCTTTTTAAAGAGAAAATGAAAAACAAGAGGATGAGGGCAGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATACAGAAGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTGTATCTGCTGAACCTTTGGAGGCTGAACAAACGAGGGAGTTAAAATTGGATAGTGGTGTTAAGCTTGGATTTTCTGTGGGAACAACATCAAAATTAAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGATGAGAATGGTGAGACTGCCAAGGGGAAACCTGGAGAGACTTCCAAAAACAAGATGGGTAGCGGTGGTCTGTCAGCTTTGGAGGCGTTGATGAGAGAGGAAGAGATGAAGAAGGAGAAGATTAATAGAAAGGATTACTGGCTGTGTGAGGGAATAATTGTGAAGGTCATGAGTAAGAATTTGGCTGAGATGGGATACTATAAACAGAAGGGAGTTGTGCGAAAGGTGATTGATAAATATGTTGGAGAGATTGAAACGCTTGATGGAAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAGTCAGGATAGTGAATGGGGCATATCGTGGATCGAATGCTAGGTTGTTGGGTGTTGACACCGATAAGTTTTGTGCTAAAGTGAAAATAGAAAAGGGTGTATACGATGGCCGGGTGCTTAAGGCTGTTGAATATGAAGATATCTGTAAACTTGCATCATAA | 1188 | 42.26 | MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFERSFMEHIKRTHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVDETPKGWFITYIDRDSETLFKEKMKNKRMRADLAEEEKQEREIQKQIERAEQLAPLASVSAEPLEAEQTRELKLDSGVKLGFSVGTTSKLKEKGESSRVVFDEDENGETAKGKPGETSKNKMGSGGLSALEALMREEEMKKEKINRKDYWLCEGIIVKVMSKNLAEMGYYKQKGVVRKVIDKYVGEIETLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAKVKIEKGVYDGRVLKAVEYEDICKLAS | 395 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 9847324 | 9848511 | + | CmaCh11G014980.1 | Cma11g01498 | 304007 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g01498 | 395 | MobiDBLite | consensus disorder prediction | 223 | 255 | - | - | |
| Cma11g01498 | 395 | MobiDBLite | consensus disorder prediction | 223 | 245 | - | - | |
| Cma11g01498 | 395 | PANTHER | BNAA05G13760D PROTEIN | 1 | 394 | - | - | |
| Cma11g01498 | 395 | Gene3D | - | 338 | 394 | IPR014722 | - | |
| Cma11g01498 | 395 | Pfam | Domain of Kin17 curved DNA-binding protein | 52 | 177 | IPR019447 | - | |
| Cma11g01498 | 395 | Coils | Coil | 154 | 183 | - | - | |
| Cma11g01498 | 395 | CDD | KOW_KIN17 | 340 | 393 | IPR041995 | - | |
| Cma11g01498 | 395 | SUPERFAMILY | beta-beta-alpha zinc fingers | 26 | 66 | IPR036236 | - | |
| Cma11g01498 | 395 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 1 | 394 | IPR037321 | - | |
| Cma11g01498 | 395 | SMART | Kin17_mid_2 | 52 | 178 | IPR019447 | - | |
| Cma11g01498 | 395 | Coils | Coil | 257 | 277 | - | - | |
| Cma11g01498 | 395 | Pfam | KN17 SH3-like C-terminal domain | 276 | 329 | IPR041330 | - | |
| Cma11g01498 | 395 | Gene3D | - | 60 | 160 | IPR038254 | - | |
| Cma11g01498 | 395 | Gene3D | - | 284 | 337 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g01498 | Cma-Chr11:9847324 | Cma19g00187 | Cma-Chr19:1238864 | 2.01E-06 | transposed | |
| Cma11g01498 | Cma-Chr11:9847324 | Cma02g01657 | Cma-Chr2:9383133 | 1.92E-06 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g01498 | K13102 | - | csv:101216499 | 724.931 |