Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01513 ATGGATTGGGGTTGGAGAAAAATTTCTGGGGAAAGAGTCACTTTCCAGGAAAACAAACAGAATCCCACAAGTTTTTCTGACTCGATTGGATCAAATAATGAAGAAGAACAGATTCTCAAGGGTTCGAGTCAAGAAAGTTATACCTCTCATGGATCCTCCAAGAGGACTCGATTGCTTCATGCGAGCCAGAACCAGACATGTTTGGTGGATGGCTGTGACTCTGACTTGAGCAATTGCAAGGAGTATCATCGTCGTCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTCAGAGGCGAGGAGAAACGATTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTTAAGAGAAGCTGTAGAAAGAGGCTTGATGGACACAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTCATCAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAATTCAGCGATCAACAAGTTCATGTTCCTGATGAACTTGGTAGGAGTTTATGGCCTATGAGAACTGAAGAAAACTCATCTTTGGTTCCATCAAATTCCTCTGGTTTCTTCAGTTTTGGAGGAGGAGACAACAAACAGCTGCCATTTTTGCAGCCTAAGAATGGCTCAAAGCAAGGAAAGCATATGGTTTCTTCTCAGTTTTGTTTCAATCAGCAACTTCCTGATACAATCTCTCAGGTGAGTGAGGGGGACAGCCAGAAAACGGTGCCTCCCAATAACTCGCCCGACGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGAGGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTCTTCCAGTCCAAACTCAAGAGGAGACTGAGCTGAATTTCAGTAGTCTAAGTGATTTCTCTGAGTCCTTTGGTTCAAAGGACAAGGCTGTTAGTAAAACCAATGTCCATCATAGTGAGTTGGGGCTTGAAATGGAGGAGGAATCTAATGGCTTGTTTCCCATTTCTTGGGAGTAG 1044 45.31 MDWGWRKISGERVTFQENKQNPTSFSDSIGSNNEEEQILKGSSQESYTSHGSSKRTRLLHASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCKGPIVLQFSDQQVHVPDELGRSLWPMRTEENSSLVPSNSSGFFSFGGGDNKQLPFLQPKNGSKQGKHMVSSQFCFNQQLPDTISQVSEGDSQKTVPPNNSPDDSGCALYLLSSHPVQALPEAGLSSLVQSHLSLPVQTQEETELNFSSLSDFSESFGSKDKAVSKTNVHHSELGLEMEEESNGLFPISWE 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9895580 9897780 - CmaCh11G015130.1 Cma11g01513 304022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01513 347 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 36 323 - -
Cma11g01513 347 Gene3D - 59 128 IPR036893 GO:0003677|GO:0005634
Cma11g01513 347 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Cma11g01513 347 MobiDBLite consensus disorder prediction 16 55 - -
Cma11g01513 347 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 323 IPR044817 GO:0003677
Cma11g01513 347 Pfam SBP domain 67 140 IPR004333 GO:0003677
Cma11g01513 347 SUPERFAMILY SBT domain 66 146 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01513 - - - bhj:120070162 517.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01513 Cma14g00725 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01513 Cma-Chr11:9895580 Cma13g00815 Cma-Chr13:6870551 1.02E-46 dispersed
Cma10g00052 Cma-Chr10:189233 Cma11g01513 Cma-Chr11:9895580 9.53E-42 wgd
Cma11g00026 Cma-Chr11:119686 Cma11g01513 Cma-Chr11:9895580 5.51E-32 wgd
Cma11g01513 Cma-Chr11:9895580 Cma14g00725 Cma-Chr14:3636994 6.68E-170 wgd
Cma11g01513 Cma-Chr11:9895580 Cma17g01437 Cma-Chr17:9453188 7.87E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1148 . . . . . . . . Cmo14g00739 Cmo11g01608 Cma11g01513 Cma14g00725 Car11g01303 Car14g00662 . Cpe03g00630 . . . . . . . . . . . . . . . Cone11ag0042 Cone18ag1438 . . . . Chy06g01539 Cme06g01786 . . Bda07g01385 . Bpe09g00547 Bpe11g01487 . . . . . . . . . . . Bhi01g02096 . . . Hepe02g1698 . . Cla05g01423 Cam05g1511 Cec05g1523 Cco05g1559 Clacu05g1518 Cmu05g1426 Cre05g1528 . Csa03g02486 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 181 992 SBP-box Gene Family AT2G47070 54.9 1.0e-229 793.9
Cma01g00262 CST 179 1011 SBP-box Gene Family AT2G47070 52.5 2.3e-221 766.1
Cma13g01059 . 135 293 SBP-box Gene Family AT1G69170 52.2 6.2e-40 162.5
Cma14g00958 CST 25 992 SBP-box Gene Family AT3G60030 53.7 2.2e-266 916.0
Cma01g00262 CST 25 1011 SBP-box Gene Family AT3G60030 53.2 3.3e-262 902.1
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50570 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50570 60.8 9.7e-37 151.8
Cma17g01437 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cma14g00725 CST 55 169 SBP-box Gene Family AT5G50670 64.1 1.1e-37 154.8
Cma11g01513 CST 63 166 SBP-box Gene Family AT5G50670 67.3 1.5e-37 154.5
Cma08g00170 . 48 165 SBP-box Gene Family AT5G50670 60.8 9.7e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35896 PF03110 SBP 3.10E-30 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01513 Cma_Chr11 FPKM 10.153846 10.384129 15.649894 16.151178 7.083384 6.118165 7.301325 1.510788 1.248157 1.515195