Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01513 ATGGATTGGGGTTGGAGAAAAATTTCTGGGGAAAGAGTCACTTTCCAGGAAAACAAACAGAATCCCACAAGTTTTTCTGACTCGATTGGATCAAATAATGAAGAAGAACAGATTCTCAAGGGTTCGAGTCAAGAAAGTTATACCTCTCATGGATCCTCCAAGAGGACTCGATTGCTTCATGCGAGCCAGAACCAGACATGTTTGGTGGATGGCTGTGACTCTGACTTGAGCAATTGCAAGGAGTATCATCGTCGTCATAGGGTCTGCGATTTGCACTCCAAAACCCCTGTTGTGATGGTCAGAGGCGAGGAGAAACGATTCTGTCAACAGTGCAGCAGATTTCATTCGCTTGGTGAGTTTGATGAGGTTAAGAGAAGCTGTAGAAAGAGGCTTGATGGACACAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTCATCAGTTCAAGGGATTTTCTGTCAAATTGCAAAGGTCCAATTGTGCTGCAATTCAGCGATCAACAAGTTCATGTTCCTGATGAACTTGGTAGGAGTTTATGGCCTATGAGAACTGAAGAAAACTCATCTTTGGTTCCATCAAATTCCTCTGGTTTCTTCAGTTTTGGAGGAGGAGACAACAAACAGCTGCCATTTTTGCAGCCTAAGAATGGCTCAAAGCAAGGAAAGCATATGGTTTCTTCTCAGTTTTGTTTCAATCAGCAACTTCCTGATACAATCTCTCAGGTGAGTGAGGGGGACAGCCAGAAAACGGTGCCTCCCAATAACTCGCCCGACGATTCGGGTTGTGCTCTCTATCTTCTGTCATCGCACCCTGTGCAAGCTCTCCCAGAGGCTGGCTTGAGCTCTTTGGTTCAGTCCCATCTGAGTCTTCCAGTCCAAACTCAAGAGGAGACTGAGCTGAATTTCAGTAGTCTAAGTGATTTCTCTGAGTCCTTTGGTTCAAAGGACAAGGCTGTTAGTAAAACCAATGTCCATCATAGTGAGTTGGGGCTTGAAATGGAGGAGGAATCTAATGGCTTGTTTCCCATTTCTTGGGAGTAG 1044 45.31 MDWGWRKISGERVTFQENKQNPTSFSDSIGSNNEEEQILKGSSQESYTSHGSSKRTRLLHASQNQTCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFISSRDFLSNCKGPIVLQFSDQQVHVPDELGRSLWPMRTEENSSLVPSNSSGFFSFGGGDNKQLPFLQPKNGSKQGKHMVSSQFCFNQQLPDTISQVSEGDSQKTVPPNNSPDDSGCALYLLSSHPVQALPEAGLSSLVQSHLSLPVQTQEETELNFSSLSDFSESFGSKDKAVSKTNVHHSELGLEMEEESNGLFPISWE 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9895580 9897780 - CmaCh11G015130.1 Cma11g01513 304022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01513 347 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 36 323 - -
Cma11g01513 347 Gene3D - 59 128 IPR036893 GO:0003677|GO:0005634
Cma11g01513 347 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Cma11g01513 347 MobiDBLite consensus disorder prediction 16 55 - -
Cma11g01513 347 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 323 IPR044817 GO:0003677
Cma11g01513 347 Pfam SBP domain 67 140 IPR004333 GO:0003677
Cma11g01513 347 SUPERFAMILY SBT domain 66 146 IPR036893 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01513 Cma14g00725 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01513 Cma-Chr11:9895580 Cma13g00815 Cma-Chr13:6870551 1.02E-46 dispersed
Cma10g00052 Cma-Chr10:189233 Cma11g01513 Cma-Chr11:9895580 9.53E-42 wgd
Cma11g00026 Cma-Chr11:119686 Cma11g01513 Cma-Chr11:9895580 5.51E-32 wgd
Cma11g01513 Cma-Chr11:9895580 Cma14g00725 Cma-Chr14:3636994 6.68E-170 wgd
Cma11g01513 Cma-Chr11:9895580 Cma17g01437 Cma-Chr17:9453188 7.87E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35896 PF03110 SBP 3.10E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01513 - - bhj:120070162 517.309