Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01514 ATGGAGAATTATCAGATGTTTTTCCCCTGCTCCGGCGGCGAAGGGTTGTCGGCTTATCATCATCCCGACATGTCGTCCGACAGTGGGTCGGATGTTTTTGGGAGTTTTCACGGTGGGAACCTGCAGGGAAATGGGTTTTTGAAGATGGAGACGGCGGCGGTGGTCGAAGGCGACAGGAATAGCGGCGGCGATAGCTACCAAATCGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAGCCCAGATATGCTTTTGAGACAAAGAGCCAAGTTGACATTCTTGATGATGGATATCGTTGGAGAAAATATGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGGTGCACACATCAAGGATGTAATGTGAAGAAACAAGTGCAAAGGTTAACAAGAGACGAAGGGGTAGTGGTGACAACATATGAAGGCATGCACACACACTCCATTGATAAGCCAACAGATAACTTCGAACAAATCTTGAGTAGAATGCAGATTTACGGTACATCTTTCTGA 528 46.21 MENYQMFFPCSGGEGLSAYHHPDMSSDSGSDVFGSFHGGNLQGNGFLKMETAAVVEGDRNSGGDSYQIGGGKKKGEKKVRKPRYAFETKSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYGTSF 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9902931 9905220 - CmaCh11G015140.1 Cma11g01514 304023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01514 175 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 171 IPR044810 GO:0003700
Cma11g01514 175 SUPERFAMILY WRKY DNA-binding domain 88 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g01514 175 ProSiteProfiles WRKY domain profile. 90 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01514 175 SMART WRKY_cls 95 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01514 175 Gene3D WRKY domain 80 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g01514 175 MobiDBLite consensus disorder prediction 58 80 - -
Cma11g01514 175 Pfam WRKY DNA -binding domain 96 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01514 175 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 1 171 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01514 Cma14g00727 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01672 Cma-Chr6:10315006 Cma11g01514 Cma-Chr11:9902931 1.55E-54 dispersed
Cma11g01514 Cma-Chr11:9902931 Cma17g00379 Cma-Chr17:2109793 1.23E-37 dispersed
Cma11g01514 Cma-Chr11:9902931 Cma14g00727 Cma-Chr14:3641445 3.98E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35897 PF03106 WRKY 3.50E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01514 - - cmax:111486729 345.51