Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01520 ATGGATCCTAAAACTTCATCATCAACAAAGCAGCCCCAAGAACTGGTACCAAACTTTTTGAACTTCCCACAAGAACACCAACAAGAACAATCGATCATGGGGGAAAACAAACCACCGGAAATCAAAGAAGAAGGTAAGAAACAATTAGCTCCAAAACGAAGCTCCAACAAAGACCGTCACACAAAAGTGGAAGGACGTGGCCGGAGAATCCGTATGCCGGCACTTTGTGCGGCGAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAAACCATCCAGTGGTTGCTACAGCAAGCGGAGCCATCGATAATCGCCGCCACTGGAACTGGAACGATCCCAGCTTCTGCTTTAGCAGCAGTGGCGGGTTCCGTTTCGCAACAAGGGGTTTCTCTCTCCGCCGGATTACAACAAAAATTGGAGGAATTAGGCGGTGGCGGGTCCAGTAGGGCCAGTTGGGGGAATTTGGGACGACCCCATTTGGCTGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCACAGCCACAGCGGTTTGGCCCTCCTCTGTCAGTGGGTTTGGGTTTCAGTCATCAACTACAGCTGGTGTTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCAGCCTTTGACTTACCCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTCTAGGTGCAAACGCTCAACAGCTACCTGGTTTAGAGCTTGGATTGAGCCAAGATCCCCATATTGGGGCTATCAATCCACAAGCATTGAACCAGTTTTACCAACAAATGGGCCAAGCTAGAGTTCATCACCATCATCAACAACACCAGCAACCTCCTGCTAAAGATGATTCACAAGATTCAGGAGAGAGAGAGAGAGAGAGAGAGATCTTTACCTGGTTTGCACCTCCTCCCCCTGTGAATGGCAATCTTTCAAGCTCTTCTTCACATGCCAGGTGTGATTATCTGCAACTTAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTCTGTTTGTTTCTCTATTCAAAAGGCGTGTTGATCATCTAAAGATACAACATGGTCTGTTAGCACAGCTAAGCTTATCATTCTATAAGATCAGTACGTCTGCTAAACGATCAACGTGA 1152 47.92 MDPKTSSSTKQPQELVPNFLNFPQEHQQEQSIMGENKPPEIKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAVAGSVSQQGVSLSAGLQQKLEELGGGGSSRASWGNLGRPHLAAAAAAAAAAAATATAVWPSSVSGFGFQSSTTAGVAQSATNLANETSNYFHKLGFPAFDLPPTNMGPMSFTSILGANAQQLPGLELGLSQDPHIGAINPQALNQFYQQMGQARVHHHHQQHQQPPAKDDSQDSGEREREREIFTWFAPPPPVNGNLSSSSSHARCDYLQLRAAWLELNFIFLFVSLFKRRVDHLKIQHGLLAQLSLSFYKISTSAKRST 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9944628 9946849 + CmaCh11G015200.1 Cma11g01520 304029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01520 383 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 298 IPR005333 GO:0003700
Cma11g01520 383 MobiDBLite consensus disorder prediction 36 67 - -
Cma11g01520 383 MobiDBLite consensus disorder prediction 1 67 - -
Cma11g01520 383 ProSiteProfiles TCP domain profile. 56 110 IPR017887 -
Cma11g01520 383 Pfam TCP family transcription factor 55 154 IPR017887 -
Cma11g01520 383 MobiDBLite consensus disorder prediction 274 303 - -
Cma11g01520 383 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 16 298 - -
Cma11g01520 383 MobiDBLite consensus disorder prediction 285 303 - -
Cma11g01520 383 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01219 Cma-Chr3:8089707 Cma11g01520 Cma-Chr11:9944628 7.57E-37 dispersed
Cma07g00905 Cma-Chr7:4280856 Cma11g01520 Cma-Chr11:9944628 1.60E-36 dispersed
Cma08g00938 Cma-Chr8:5846689 Cma11g01520 Cma-Chr11:9944628 1.03E-37 dispersed
Cma11g01520 Cma-Chr11:9944628 Cma13g01122 Cma-Chr13:8356359 1.24E-38 dispersed
Cma11g01520 Cma-Chr11:9944628 Cma14g00730 Cma-Chr14:3670998 2.73E-148 wgd
Cma11g01520 Cma-Chr11:9944628 Cma17g01429 Cma-Chr17:9416103 1.07E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35898 PF03634 TCP 2.00E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01520 - - cmax:111486688 672.544