Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01520 ATGGATCCTAAAACTTCATCATCAACAAAGCAGCCCCAAGAACTGGTACCAAACTTTTTGAACTTCCCACAAGAACACCAACAAGAACAATCGATCATGGGGGAAAACAAACCACCGGAAATCAAAGAAGAAGGTAAGAAACAATTAGCTCCAAAACGAAGCTCCAACAAAGACCGTCACACAAAAGTGGAAGGACGTGGCCGGAGAATCCGTATGCCGGCACTTTGTGCGGCGAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAAACCATCCAGTGGTTGCTACAGCAAGCGGAGCCATCGATAATCGCCGCCACTGGAACTGGAACGATCCCAGCTTCTGCTTTAGCAGCAGTGGCGGGTTCCGTTTCGCAACAAGGGGTTTCTCTCTCCGCCGGATTACAACAAAAATTGGAGGAATTAGGCGGTGGCGGGTCCAGTAGGGCCAGTTGGGGGAATTTGGGACGACCCCATTTGGCTGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCACAGCCACAGCGGTTTGGCCCTCCTCTGTCAGTGGGTTTGGGTTTCAGTCATCAACTACAGCTGGTGTTGCTCAATCAGCCACTAATTTAGCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCAGCCTTTGACTTACCCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTCTAGGTGCAAACGCTCAACAGCTACCTGGTTTAGAGCTTGGATTGAGCCAAGATCCCCATATTGGGGCTATCAATCCACAAGCATTGAACCAGTTTTACCAACAAATGGGCCAAGCTAGAGTTCATCACCATCATCAACAACACCAGCAACCTCCTGCTAAAGATGATTCACAAGATTCAGGAGAGAGAGAGAGAGAGAGAGAGATCTTTACCTGGTTTGCACCTCCTCCCCCTGTGAATGGCAATCTTTCAAGCTCTTCTTCACATGCCAGGTGTGATTATCTGCAACTTAGAGCAGCTTGGCTTGAGCTTAACTTCATTTTTCTGTTTGTTTCTCTATTCAAAAGGCGTGTTGATCATCTAAAGATACAACATGGTCTGTTAGCACAGCTAAGCTTATCATTCTATAAGATCAGTACGTCTGCTAAACGATCAACGTGA 1152 47.92 MDPKTSSSTKQPQELVPNFLNFPQEHQQEQSIMGENKPPEIKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAVAGSVSQQGVSLSAGLQQKLEELGGGGSSRASWGNLGRPHLAAAAAAAAAAAATATAVWPSSVSGFGFQSSTTAGVAQSATNLANETSNYFHKLGFPAFDLPPTNMGPMSFTSILGANAQQLPGLELGLSQDPHIGAINPQALNQFYQQMGQARVHHHHQQHQQPPAKDDSQDSGEREREREIFTWFAPPPPVNGNLSSSSSHARCDYLQLRAAWLELNFIFLFVSLFKRRVDHLKIQHGLLAQLSLSFYKISTSAKRST 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9944628 9946849 + CmaCh11G015200.1 Cma11g01520 304029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01520 383 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 298 IPR005333 GO:0003700
Cma11g01520 383 MobiDBLite consensus disorder prediction 36 67 - -
Cma11g01520 383 MobiDBLite consensus disorder prediction 1 67 - -
Cma11g01520 383 ProSiteProfiles TCP domain profile. 56 110 IPR017887 -
Cma11g01520 383 Pfam TCP family transcription factor 55 154 IPR017887 -
Cma11g01520 383 MobiDBLite consensus disorder prediction 274 303 - -
Cma11g01520 383 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 16 298 - -
Cma11g01520 383 MobiDBLite consensus disorder prediction 285 303 - -
Cma11g01520 383 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01520 - - - cmax:111486688 672.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01219 Cma-Chr3:8089707 Cma11g01520 Cma-Chr11:9944628 7.57E-37 dispersed
Cma07g00905 Cma-Chr7:4280856 Cma11g01520 Cma-Chr11:9944628 1.60E-36 dispersed
Cma08g00938 Cma-Chr8:5846689 Cma11g01520 Cma-Chr11:9944628 1.03E-37 dispersed
Cma11g01520 Cma-Chr11:9944628 Cma13g01122 Cma-Chr13:8356359 1.24E-38 dispersed
Cma11g01520 Cma-Chr11:9944628 Cma14g00730 Cma-Chr14:3670998 2.73E-148 wgd
Cma11g01520 Cma-Chr11:9944628 Cma17g01429 Cma-Chr17:9416103 1.07E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00788 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.9e-65 245.0
Cma04g01259 . 36 250 TCP Transcription Factor Family AT5G23280 61.8 2.2e-64 243.0
Cma04g02246 . 74 303 TCP Transcription Factor Family AT5G23280 59.9 9.4e-63 237.7
Cma18g00810 . 33 230 TCP Transcription Factor Family AT5G23280 57.6 2.6e-57 219.5
Cma04g01649 CCT,ECH 60 154 TCP Transcription Factor Family AT3G47620 88.7 5.7e-40 162.9
Cma13g01122 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.2e-39 161.0
Cma04g01856 . 129 211 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cma04g01856 . 129 221 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cma14g00730 . 49 316 TCP Transcription Factor Family AT3G27010 58.8 8.4e-61 231.5
Cma11g01520 . 32 276 TCP Transcription Factor Family AT3G27010 54.4 7.6e-54 208.4
Cma17g01429 . 37 254 TCP Transcription Factor Family AT3G27010 52.8 8.2e-48 188.3
Cma15g00788 . 10 255 TCP Transcription Factor Family AT5G08330 60.0 8.1e-64 241.1
Cma04g02246 . 40 302 TCP Transcription Factor Family AT5G08330 57.5 5.2e-63 238.4
Cma04g01259 . 8 248 TCP Transcription Factor Family AT5G08330 56.0 2.0e-62 236.5
Cma18g00810 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 3.0e-58 222.6
Cma11g00212 CCT 31 173 TCP Transcription Factor Family AT5G60970 58.6 1.6e-39 161.0
Cma14g01163 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 1.9e-37 154.1
Cma11g01924 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35898 PF03634 TCP 2.00E-30 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01520 Cma_Chr11 FPKM 9.997739 9.028857 7.219244 6.939651 9.551624 7.703237 7.568022 6.633239 8.058116 7.342319