Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01543 ATGGCCATCTCAGAATCTCAGACCCGTTCCTCTCTGATTCCTACTTTCCTCTACTCGTCTTCGGCCATTCCGTTCCAGAAGATGCTTCGCTCCAATGATCCTTGTGTATCGCCGTCGCCATCGCCATCTCCGATTGTCGAATCTACACCGAGGAAGGTCTTCGCGATTCCGTCTCCGAGTGAACCGAGAAAGAAACTGGAGATGTATTCGCCGGCTTTCTATGCTGCCTGTGCCTTCGGTGGAAGCCTCAGTTGTGGTCTCACTCACACGGCCGTCACTCCTCTCGATCTCATCAAGTGCAATATGCAGATTGACCCTGTGAAATACAAGAGCATTTCATCAGGTTTTGGAGTTCTTTTAAAGGAGCAAGGAATCAGGGGCTTCTTCAGGGGTTGGGCGCCAACTTTTCTGGGTTACAGTGCTCAGGGTGCTTGCAAGTATGGTATCTATGAATTCTTTAAGAAATACTATTCCGACATAGCTGGTCCAGAGTATGCAGCAAAGTACAAGACCTTGATCTATCTTGCTGGCTCTGCATCTGCTGAAGTGATTGCAGATGTTGCACTTTGCCCATTTGAAGCTGTTAAAGTTAGAGTTCAAACTCAGCCTGGTTTTGCTAGAGGTCTGTCAGATGGCCTTCCCAAATTCGTCAGATCTGAAGGTGCCCTGGGGTTGTACAAGGGTATTGTTCCTCTATGGGGGCGTCAGATCCCATATACAATGATGAAATTTGCAACATTTGAGAATCTCGTGGAGCTCATCTACAAGCATGTCATTCCCAAGCCAAAGAACGAATGCAGCAGCGCCTTGCAGCTGGGCGTCAGCTTTGCTGGTGGATATATTGCGGGAGTTTCTTGTGCTATAGTTTCTCACCCTGCAGACAATCTGGTCTCTTTTCTCAACAATGCTAAAGGGGCTACCGTTGGTGACGCTGTGAAGAAGCTTGGAGTATGGGGTCTCTTTACACGAGGGCTGCCTCTACGCATAGTCATGATTGGAACCCTCACTGGAGCTCAGTGGGTTATCTACGACGCATTCAAAGTTTTTGTCGGATTGCCAACTACCGGTGGGGTTGCCCCTGCCCCTGCCCCCGCCATTGAAATTCCAAGTGCGTAG 1116 49.1 MAISESQTRSSLIPTFLYSSSAIPFQKMLRSNDPCVSPSPSPSPIVESTPRKVFAIPSPSEPRKKLEMYSPAFYAACAFGGSLSCGLTHTAVTPLDLIKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWAPTFLGYSAQGACKYGIYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFATFENLVELIYKHVIPKPKNECSSALQLGVSFAGGYIAGVSCAIVSHPADNLVSFLNNAKGATVGDAVKKLGVWGLFTRGLPLRIVMIGTLTGAQWVIYDAFKVFVGLPTTGGVAPAPAPAIEIPSA 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10063250 10067255 - CmaCh11G015430.1 Cma11g01543 304052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01543 371 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 4 366 IPR044677 GO:0005315|GO:1990547
Cma11g01543 371 SUPERFAMILY Mitochondrial carrier 74 345 IPR023395 -
Cma11g01543 371 Pfam Mitochondrial carrier protein 173 257 IPR018108 -
Cma11g01543 371 Pfam Mitochondrial carrier protein 74 158 IPR018108 -
Cma11g01543 371 Gene3D Mitochondrial carrier domain 51 164 IPR023395 -
Cma11g01543 371 Gene3D Mitochondrial carrier domain 165 351 IPR023395 -
Cma11g01543 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 169 253 IPR018108 -
Cma11g01543 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 72 156 IPR018108 -
Cma11g01543 371 PANTHER MITOCHONDRIAL PHOSPHATE TRANSPORTER 4 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02217 Cma-Chr4:15459949 Cma11g01543 Cma-Chr11:10063250 0 dispersed
Cma11g01543 Cma-Chr11:10063250 Cma15g00816 Cma-Chr15:4108364 0 dispersed
Cma11g01327 Cma-Chr11:8803788 Cma11g01543 Cma-Chr11:10063250 4.15E-110 transposed
Cma10g00026 Cma-Chr10:98679 Cma11g01543 Cma-Chr11:10063250 0 wgd
Cma11g00008 Cma-Chr11:45311 Cma11g01543 Cma-Chr11:10063250 2.85E-30 wgd
Cma11g01543 Cma-Chr11:10063250 Cma14g00756 Cma-Chr14:3776396 3.90E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01543 K15102 - csv:101203018 619.772