Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01550 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTCGACGGCGACCATGACGACGCCGCTTCCTGGACCAGAGCCACTGACGACCACTACGACGATATCGCCATTGCCGGCTCCATTTCTTCCTTCAAATCCATGCTCGAACCTGACTGTTTCATTAACTCTTCTTCTGCTCCTCTCAACTCCTCTCTCCATCGTTTCAATCCCACAGATAACTTCCTCTCTTCCTGCTCTCCCTCCCAACCTTTTGCTCTCGATCCTTCCCAGTCTATGTTGCCTTCTCACAAATCCTGTTTCTCTTCTCTTCTTAATGTTGTTTGCGGCAGTAATTTCGATAATGCCTATGATTTTGGAGCCGATACTGCTCTGTTTGGATCTTACCAGGGTAATCAAGCTTCCAATTCCTCCGTTTTCATGGGATTCACTGGCATTTCTCCTCTTCCTCAAATCGGTAACCAGGCGCTTAGCTTAAATCATTCCGAGTTTCCGGTTGCTGATAACCCTCCCGCTTTCGGCGATGGATTTAATCCGGCGGCTGCGTTTGAGAGCTTCGATGGCTGCGGGAATGCTCTGTTTCAGAATAGGCCTAAGGTTTTGAGACCTCTTGAAGTGCTACCGCAAGTCGGTGCTCAGCCGACGCTGTTTCAGAAGCGAGCGGCGCACCGAGTTGTCTCTCCCGGAGCTGATAAACTTGAGAATCTGGAGGTTTCGGGTTTGAAATTTGGAGAAGGCTCAACGTGGACGGCGGATTTGGAGAATCTGAGTAAGAACAACGGCGATGAGGACGGTGAGGATGGTAGCGTGGATGTTTCTCGGTTTAATTACGACTCCGATGAAGGCAATGAGTATAACAAGCAAGAGGACAATGTTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGCACTGTAACCGGCGGTGACCAGAAAGGGAAGAAGAAGGGGATGCCGGCGAAGAATCTCATGGCGGAGCGGCGGCGGAGAAAGAAGCTGAATGATAGACTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATCCTTGGAGACGCCATAGACTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTTGAATCGACTCCTTCTGGTTCTTTGCTGCAACCTTCTGCAAGCTTTCACCCTTTGACGCCAACGCTGCCAACTCTTCCCTGTCGTGTCAAGGAAGAGCTGTGTCCGAGCTCCTTGTGCAGCCCCAAAAATCAGCCTGCCAGGGTCGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTTGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAGCCTCGGCTTGGATATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTGGACGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTACCTGAGCAAATAAAAGCAGTGCTGTTGGAATCAGCTGGCTTACATGGTGTTATTTAA 1518 49.08 MLPKSTGILWLDGDHDDAASWTRATDDHYDDIAIAGSISSFKSMLEPDCFINSSSAPLNSSLHRFNPTDNFLSSCSPSQPFALDPSQSMLPSHKSCFSSLLNVVCGSNFDNAYDFGADTALFGSYQGNQASNSSVFMGFTGISPLPQIGNQALSLNHSEFPVADNPPAFGDGFNPAAAFESFDGCGNALFQNRPKVLRPLEVLPQVGAQPTLFQKRAAHRVVSPGADKLENLEVSGLKFGEGSTWTADLENLSKNNGDEDGEDGSVDVSRFNYDSDEGNEYNKQEDNVNAKNCGSNSNANSTVTGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPSGSLLQPSASFHPLTPTLPTLPCRVKEELCPSSLCSPKNQPARVEVRVREGRAVNIHMFCSCKPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLESAGLHGVI 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10084392 10088068 + CmaCh11G015500.1 Cma11g01550 304059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01550 505 Gene3D - 308 378 IPR036638 GO:0046983
Cma11g01550 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Cma11g01550 505 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 74 504 - -
Cma11g01550 505 Pfam Helix-loop-helix DNA-binding domain 321 363 IPR011598 GO:0046983
Cma11g01550 505 MobiDBLite consensus disorder prediction 279 315 - -
Cma11g01550 505 CDD bHLH_AtAMS_like 317 381 - -
Cma11g01550 505 CDD ACT_UUR-ACR-like 441 494 - -
Cma11g01550 505 MobiDBLite consensus disorder prediction 285 307 - -
Cma11g01550 505 Coils Coil 357 377 - -
Cma11g01550 505 SMART finulus 320 369 IPR011598 GO:0046983
Cma11g01550 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 381 IPR036638 GO:0046983
Cma11g01550 505 ProSiteProfiles ACT domain profile. 433 505 IPR002912 -
Cma11g01550 505 PANTHER BHLH TRANSCRIPTIONAL FACTOR 74 504 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01550 Cma14g00762 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01550 Cma-Chr11:10084392 Cma18g00292 Cma-Chr18:1555718 1.23E-152 dispersed
Cma15g00153 Cma-Chr15:716865 Cma11g01550 Cma-Chr11:10084392 6.29E-08 dispersed
Cma11g01550 Cma-Chr11:10084392 Cma14g00762 Cma-Chr14:3798446 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35901 PF00010 HLH 2.00E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01550 - - bhj:120082707 777.319