Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01550 | ATGCTTCCCAAATCCACCGGAATCCTCTGGCTCGACGGCGACCATGACGACGCCGCTTCCTGGACCAGAGCCACTGACGACCACTACGACGATATCGCCATTGCCGGCTCCATTTCTTCCTTCAAATCCATGCTCGAACCTGACTGTTTCATTAACTCTTCTTCTGCTCCTCTCAACTCCTCTCTCCATCGTTTCAATCCCACAGATAACTTCCTCTCTTCCTGCTCTCCCTCCCAACCTTTTGCTCTCGATCCTTCCCAGTCTATGTTGCCTTCTCACAAATCCTGTTTCTCTTCTCTTCTTAATGTTGTTTGCGGCAGTAATTTCGATAATGCCTATGATTTTGGAGCCGATACTGCTCTGTTTGGATCTTACCAGGGTAATCAAGCTTCCAATTCCTCCGTTTTCATGGGATTCACTGGCATTTCTCCTCTTCCTCAAATCGGTAACCAGGCGCTTAGCTTAAATCATTCCGAGTTTCCGGTTGCTGATAACCCTCCCGCTTTCGGCGATGGATTTAATCCGGCGGCTGCGTTTGAGAGCTTCGATGGCTGCGGGAATGCTCTGTTTCAGAATAGGCCTAAGGTTTTGAGACCTCTTGAAGTGCTACCGCAAGTCGGTGCTCAGCCGACGCTGTTTCAGAAGCGAGCGGCGCACCGAGTTGTCTCTCCCGGAGCTGATAAACTTGAGAATCTGGAGGTTTCGGGTTTGAAATTTGGAGAAGGCTCAACGTGGACGGCGGATTTGGAGAATCTGAGTAAGAACAACGGCGATGAGGACGGTGAGGATGGTAGCGTGGATGTTTCTCGGTTTAATTACGACTCCGATGAAGGCAATGAGTATAACAAGCAAGAGGACAATGTTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGCACTGTAACCGGCGGTGACCAGAAAGGGAAGAAGAAGGGGATGCCGGCGAAGAATCTCATGGCGGAGCGGCGGCGGAGAAAGAAGCTGAATGATAGACTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATCCTTGGAGACGCCATAGACTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTTGAATCGACTCCTTCTGGTTCTTTGCTGCAACCTTCTGCAAGCTTTCACCCTTTGACGCCAACGCTGCCAACTCTTCCCTGTCGTGTCAAGGAAGAGCTGTGTCCGAGCTCCTTGTGCAGCCCCAAAAATCAGCCTGCCAGGGTCGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTTGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAGCCTCGGCTTGGATATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTGGACGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTACCTGAGCAAATAAAAGCAGTGCTGTTGGAATCAGCTGGCTTACATGGTGTTATTTAA | 1518 | 49.08 | MLPKSTGILWLDGDHDDAASWTRATDDHYDDIAIAGSISSFKSMLEPDCFINSSSAPLNSSLHRFNPTDNFLSSCSPSQPFALDPSQSMLPSHKSCFSSLLNVVCGSNFDNAYDFGADTALFGSYQGNQASNSSVFMGFTGISPLPQIGNQALSLNHSEFPVADNPPAFGDGFNPAAAFESFDGCGNALFQNRPKVLRPLEVLPQVGAQPTLFQKRAAHRVVSPGADKLENLEVSGLKFGEGSTWTADLENLSKNNGDEDGEDGSVDVSRFNYDSDEGNEYNKQEDNVNAKNCGSNSNANSTVTGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPSGSLLQPSASFHPLTPTLPTLPCRVKEELCPSSLCSPKNQPARVEVRVREGRAVNIHMFCSCKPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLESAGLHGVI | 505 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10084392 | 10088068 | + | CmaCh11G015500.1 | Cma11g01550 | 304059 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01550 | 505 | Gene3D | - | 308 | 378 | IPR036638 | GO:0046983 | |
Cma11g01550 | 505 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 314 | 363 | IPR011598 | GO:0046983 | |
Cma11g01550 | 505 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 74 | 504 | - | - | |
Cma11g01550 | 505 | Pfam | Helix-loop-helix DNA-binding domain | 321 | 363 | IPR011598 | GO:0046983 | |
Cma11g01550 | 505 | MobiDBLite | consensus disorder prediction | 279 | 315 | - | - | |
Cma11g01550 | 505 | CDD | bHLH_AtAMS_like | 317 | 381 | - | - | |
Cma11g01550 | 505 | CDD | ACT_UUR-ACR-like | 441 | 494 | - | - | |
Cma11g01550 | 505 | MobiDBLite | consensus disorder prediction | 285 | 307 | - | - | |
Cma11g01550 | 505 | Coils | Coil | 357 | 377 | - | - | |
Cma11g01550 | 505 | SMART | finulus | 320 | 369 | IPR011598 | GO:0046983 | |
Cma11g01550 | 505 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 317 | 381 | IPR036638 | GO:0046983 | |
Cma11g01550 | 505 | ProSiteProfiles | ACT domain profile. | 433 | 505 | IPR002912 | - | |
Cma11g01550 | 505 | PANTHER | BHLH TRANSCRIPTIONAL FACTOR | 74 | 504 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01550 | Cma14g00762 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01550 | Cma-Chr11:10084392 | Cma18g00292 | Cma-Chr18:1555718 | 1.23E-152 | dispersed | |
Cma15g00153 | Cma-Chr15:716865 | Cma11g01550 | Cma-Chr11:10084392 | 6.29E-08 | dispersed | |
Cma11g01550 | Cma-Chr11:10084392 | Cma14g00762 | Cma-Chr14:3798446 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35901 | PF00010 | HLH | 2.00E-09 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01550 | - | - | bhj:120082707 | 777.319 |