Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01553 ATGTCCATCCTGCCTTCACAAGTCCAGGGTTCCACTTCAACATCTTCTTCGTCTTCAGCTTCCTCTCTAAACCCTAATTCCCACCATGGAACCGACCCCCTCTTCTCTCAATCCACTCTCTCTCCCACGCATTCCTTTCCATCCCTACGGATTTCCGATCCCCATTCGTCTCTCGGGGATTCCTGCAACGTATCAGGCCTGTCGATTCAACCTGCAGATGATGCTGAATCTTCCAAGAAGGTTAGCGAATTAGAGAATCTGAATGATTTTAAGATGCCAGCTCATCAAAACACTGAAACCCATTTGCAGAGCCAATCTGGTGTAGAAGATGGTGGATCAGTCCTTCCCGGGAGTAAAATATCGTCTTCTATAATTTCTTCTCATGATCAGCAAAGCGCTAGGTCTGCAAACTCTCATGGCAACAATAAACGCTCAGCTGGAAGAAAAGCCCAAATGACAAATGGAAACCATTTGCTTAATTTTCAATATGATCCCATTTCTCGTCCTCGTCCTCGAGCCAGAGCTCCTCCTCCAAGAAGGCCGCATAAGATAAAGCCATACAACAAGGATCTATTTCTCCAGGCTAATTACAAATTTGTGGTTTTAGATACAGGTTATCATACGCCTGAATATTTGGATCCTGATAAAATGCTGCGTTGGGAGGATATCATATGTGTAAGATATTCTACACCATCATTGGTTCAATGTCCTATTTGTCTGGAGCATCCACACTGTCCTCAAATTACTTCATGTGGACATATTTATTGTTTCCCGTGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCAGAAAGGTGACTGCTGGAAAAAATGTCCTTTGTGTTTTGTGATGCTGTCTCTGAAGGATTTATACACCGTCCACATTGAGCTTTTGAAGCAATATTCTGTTGGTGATACTATAGAATTTATGCTTTTAACTCGGCAAAAAGATTCATTTGCCTTATCATTCAAGGATAAACAAGAGGATGGTATCAGGTCAAGTGATAACGATGAAATCTATGATTCTTTTTCGAAGTTTATATTTACATCTGACGTGGATCTCTCAGTGCGGCAAGCAATATCTGATTTAGATGCCTGGTTAGCAAAAGCAGAAACAGGGCAAGTAGATGACCTCGAAAAGCTTCCATATGTTTGTGCTGTTTTGGAACAACTGGAGCAGAGGAAGAAGGATTGGAATGAACTTCAGGCCTGTTTTAAGCAGAATGACTGTCAGATAAGATCTCAAACGCTCCTTCCAACTGGTAATGTTAGCAATGCTGGTCCTGGAGCATGCAGTTCTAGACACGAGGCTTCTTCCATTGATATTAATGATGATTGCAAGCTTCTAGGGAATGTAGTGCAAGATAAGTTGGATTATTCTACTCATGTGGGTCAGACTGAGGCTGTTGATGAACTTTTAGAACTCCAACAAAACTCAAATGAAATTAGAGATGCAAAGGACAAGGACTCGTACAATTTTTACCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAATATTATGGGAGTTATGGCAGGCTGCCACTCAGAATAAGTGGAAAGGTTTTAGAATTTGAAACAGTCACCCAAACCGAGGCCACAAGAAGGCGGTATCGTTATTTGAGTCATTTTTCCTTAACAACATCGTTTCAGCTATGTGAAATTGATTTGACCAACCTGTTGCCTTCGTCTTCCATGATTCCCTTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAAAAAGATGCAAAGGGAGAAGATCAAAGCAGAATCTGCTTCAACGTGTTCTTTGTCAATGATGGCCGGTTCAGGAAGTTCATATCGTTACGATACTCCAAACCTTTCCCTGGATGACTTTGAAGCTTTGGGAAGTTCTCCTGTGACATCATCGAGCCCTCCTGTTGGCGGGAGGCAACTGTTCTCGAGTGTTACACGACTTGGTTTCGCCGCCGCCCATGATTCTCCATCCTTGAGAATTGAAGAAACTGATTCTCTGCACATTAATGAAGTGAAAAGTGATTCATCGGGTGCAAATGAGATACACAATGCAACTCCATCGTTTGCGAATATAATATCGAGGGCGAAGTCTGGAGGAAGTACAGAATCTCCTAAGGCAAATGAAGTGGGAAAGAAGGGGAAGAAACCTAGTCGAGTTTTGTTATCCACCGCGGGTGGTCGGCGCTATTGA 2229 42.62 MSILPSQVQGSTSTSSSSSASSLNPNSHHGTDPLFSQSTLSPTHSFPSLRISDPHSSLGDSCNVSGLSIQPADDAESSKKVSELENLNDFKMPAHQNTETHLQSQSGVEDGGSVLPGSKISSSIISSHDQQSARSANSHGNNKRSAGRKAQMTNGNHLLNFQYDPISRPRPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDTGYHTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPHCPQITSCGHIYCFPCILRYLLMGKEDQKGDCWKKCPLCFVMLSLKDLYTVHIELLKQYSVGDTIEFMLLTRQKDSFALSFKDKQEDGIRSSDNDEIYDSFSKFIFTSDVDLSVRQAISDLDAWLAKAETGQVDDLEKLPYVCAVLEQLEQRKKDWNELQACFKQNDCQIRSQTLLPTGNVSNAGPGACSSRHEASSIDINDDCKLLGNVVQDKLDYSTHVGQTEAVDELLELQQNSNEIRDAKDKDSYNFYQATDGQHIILHPLNMKCLLQYYGSYGRLPLRISGKVLEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSSSMIPFMDEIKKREKQRKQLAKKMQREKIKAESASTCSLSMMAGSGSSYRYDTPNLSLDDFEALGSSPVTSSSPPVGGRQLFSSVTRLGFAAAHDSPSLRIEETDSLHINEVKSDSSGANEIHNATPSFANIISRAKSGGSTESPKANEVGKKGKKPSRVLLSTAGGRRY 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10101587 10107503 - CmaCh11G015530.1 Cma11g01553 304062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01553 742 MobiDBLite consensus disorder prediction 1 72 - -
Cma11g01553 742 SMART ring_2 236 282 IPR001841 -
Cma11g01553 742 MobiDBLite consensus disorder prediction 97 185 - -
Cma11g01553 742 CDD RING-HC_RNF10 236 283 - -
Cma11g01553 742 MobiDBLite consensus disorder prediction 707 742 - -
Cma11g01553 742 Pfam Zinc finger, C3HC4 type (RING finger) 236 282 IPR018957 GO:0046872
Cma11g01553 742 SUPERFAMILY RING/U-box 231 295 - -
Cma11g01553 742 MobiDBLite consensus disorder prediction 97 161 - -
Cma11g01553 742 ProSitePatterns Zinc finger RING-type signature. 251 260 IPR017907 -
Cma11g01553 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 319 IPR013083 -
Cma11g01553 742 Coils Coil 389 409 - -
Cma11g01553 742 Coils Coil 579 602 - -
Cma11g01553 742 ProSiteProfiles Zinc finger RING-type profile. 236 282 IPR001841 -
Cma11g01553 742 MobiDBLite consensus disorder prediction 1 81 - -
Cma11g01553 742 PANTHER RING FINGER 10 FAMILY MEMBER 129 738 IPR039739 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01553 Cma-Chr11:10101587 Cma06g00107 Cma-Chr6:576243 4.41E-07 dispersed
Cma11g01553 Cma-Chr11:10101587 Cma14g00411 Cma-Chr14:1923257 1.64E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01553 - - csv:101203987 1199.5