Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01553 | ATGTCCATCCTGCCTTCACAAGTCCAGGGTTCCACTTCAACATCTTCTTCGTCTTCAGCTTCCTCTCTAAACCCTAATTCCCACCATGGAACCGACCCCCTCTTCTCTCAATCCACTCTCTCTCCCACGCATTCCTTTCCATCCCTACGGATTTCCGATCCCCATTCGTCTCTCGGGGATTCCTGCAACGTATCAGGCCTGTCGATTCAACCTGCAGATGATGCTGAATCTTCCAAGAAGGTTAGCGAATTAGAGAATCTGAATGATTTTAAGATGCCAGCTCATCAAAACACTGAAACCCATTTGCAGAGCCAATCTGGTGTAGAAGATGGTGGATCAGTCCTTCCCGGGAGTAAAATATCGTCTTCTATAATTTCTTCTCATGATCAGCAAAGCGCTAGGTCTGCAAACTCTCATGGCAACAATAAACGCTCAGCTGGAAGAAAAGCCCAAATGACAAATGGAAACCATTTGCTTAATTTTCAATATGATCCCATTTCTCGTCCTCGTCCTCGAGCCAGAGCTCCTCCTCCAAGAAGGCCGCATAAGATAAAGCCATACAACAAGGATCTATTTCTCCAGGCTAATTACAAATTTGTGGTTTTAGATACAGGTTATCATACGCCTGAATATTTGGATCCTGATAAAATGCTGCGTTGGGAGGATATCATATGTGTAAGATATTCTACACCATCATTGGTTCAATGTCCTATTTGTCTGGAGCATCCACACTGTCCTCAAATTACTTCATGTGGACATATTTATTGTTTCCCGTGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCAGAAAGGTGACTGCTGGAAAAAATGTCCTTTGTGTTTTGTGATGCTGTCTCTGAAGGATTTATACACCGTCCACATTGAGCTTTTGAAGCAATATTCTGTTGGTGATACTATAGAATTTATGCTTTTAACTCGGCAAAAAGATTCATTTGCCTTATCATTCAAGGATAAACAAGAGGATGGTATCAGGTCAAGTGATAACGATGAAATCTATGATTCTTTTTCGAAGTTTATATTTACATCTGACGTGGATCTCTCAGTGCGGCAAGCAATATCTGATTTAGATGCCTGGTTAGCAAAAGCAGAAACAGGGCAAGTAGATGACCTCGAAAAGCTTCCATATGTTTGTGCTGTTTTGGAACAACTGGAGCAGAGGAAGAAGGATTGGAATGAACTTCAGGCCTGTTTTAAGCAGAATGACTGTCAGATAAGATCTCAAACGCTCCTTCCAACTGGTAATGTTAGCAATGCTGGTCCTGGAGCATGCAGTTCTAGACACGAGGCTTCTTCCATTGATATTAATGATGATTGCAAGCTTCTAGGGAATGTAGTGCAAGATAAGTTGGATTATTCTACTCATGTGGGTCAGACTGAGGCTGTTGATGAACTTTTAGAACTCCAACAAAACTCAAATGAAATTAGAGATGCAAAGGACAAGGACTCGTACAATTTTTACCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAATATTATGGGAGTTATGGCAGGCTGCCACTCAGAATAAGTGGAAAGGTTTTAGAATTTGAAACAGTCACCCAAACCGAGGCCACAAGAAGGCGGTATCGTTATTTGAGTCATTTTTCCTTAACAACATCGTTTCAGCTATGTGAAATTGATTTGACCAACCTGTTGCCTTCGTCTTCCATGATTCCCTTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAAAAAGATGCAAAGGGAGAAGATCAAAGCAGAATCTGCTTCAACGTGTTCTTTGTCAATGATGGCCGGTTCAGGAAGTTCATATCGTTACGATACTCCAAACCTTTCCCTGGATGACTTTGAAGCTTTGGGAAGTTCTCCTGTGACATCATCGAGCCCTCCTGTTGGCGGGAGGCAACTGTTCTCGAGTGTTACACGACTTGGTTTCGCCGCCGCCCATGATTCTCCATCCTTGAGAATTGAAGAAACTGATTCTCTGCACATTAATGAAGTGAAAAGTGATTCATCGGGTGCAAATGAGATACACAATGCAACTCCATCGTTTGCGAATATAATATCGAGGGCGAAGTCTGGAGGAAGTACAGAATCTCCTAAGGCAAATGAAGTGGGAAAGAAGGGGAAGAAACCTAGTCGAGTTTTGTTATCCACCGCGGGTGGTCGGCGCTATTGA | 2229 | 42.62 | MSILPSQVQGSTSTSSSSSASSLNPNSHHGTDPLFSQSTLSPTHSFPSLRISDPHSSLGDSCNVSGLSIQPADDAESSKKVSELENLNDFKMPAHQNTETHLQSQSGVEDGGSVLPGSKISSSIISSHDQQSARSANSHGNNKRSAGRKAQMTNGNHLLNFQYDPISRPRPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDTGYHTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPHCPQITSCGHIYCFPCILRYLLMGKEDQKGDCWKKCPLCFVMLSLKDLYTVHIELLKQYSVGDTIEFMLLTRQKDSFALSFKDKQEDGIRSSDNDEIYDSFSKFIFTSDVDLSVRQAISDLDAWLAKAETGQVDDLEKLPYVCAVLEQLEQRKKDWNELQACFKQNDCQIRSQTLLPTGNVSNAGPGACSSRHEASSIDINDDCKLLGNVVQDKLDYSTHVGQTEAVDELLELQQNSNEIRDAKDKDSYNFYQATDGQHIILHPLNMKCLLQYYGSYGRLPLRISGKVLEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSSSMIPFMDEIKKREKQRKQLAKKMQREKIKAESASTCSLSMMAGSGSSYRYDTPNLSLDDFEALGSSPVTSSSPPVGGRQLFSSVTRLGFAAAHDSPSLRIEETDSLHINEVKSDSSGANEIHNATPSFANIISRAKSGGSTESPKANEVGKKGKKPSRVLLSTAGGRRY | 742 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10101587 | 10107503 | - | CmaCh11G015530.1 | Cma11g01553 | 304062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01553 | 742 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - | |
Cma11g01553 | 742 | SMART | ring_2 | 236 | 282 | IPR001841 | - | |
Cma11g01553 | 742 | MobiDBLite | consensus disorder prediction | 97 | 185 | - | - | |
Cma11g01553 | 742 | CDD | RING-HC_RNF10 | 236 | 283 | - | - | |
Cma11g01553 | 742 | MobiDBLite | consensus disorder prediction | 707 | 742 | - | - | |
Cma11g01553 | 742 | Pfam | Zinc finger, C3HC4 type (RING finger) | 236 | 282 | IPR018957 | GO:0046872 | |
Cma11g01553 | 742 | SUPERFAMILY | RING/U-box | 231 | 295 | - | - | |
Cma11g01553 | 742 | MobiDBLite | consensus disorder prediction | 97 | 161 | - | - | |
Cma11g01553 | 742 | ProSitePatterns | Zinc finger RING-type signature. | 251 | 260 | IPR017907 | - | |
Cma11g01553 | 742 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 319 | IPR013083 | - | |
Cma11g01553 | 742 | Coils | Coil | 389 | 409 | - | - | |
Cma11g01553 | 742 | Coils | Coil | 579 | 602 | - | - | |
Cma11g01553 | 742 | ProSiteProfiles | Zinc finger RING-type profile. | 236 | 282 | IPR001841 | - | |
Cma11g01553 | 742 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Cma11g01553 | 742 | PANTHER | RING FINGER 10 FAMILY MEMBER | 129 | 738 | IPR039739 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01553 | Cma-Chr11:10101587 | Cma06g00107 | Cma-Chr6:576243 | 4.41E-07 | dispersed | |
Cma11g01553 | Cma-Chr11:10101587 | Cma14g00411 | Cma-Chr14:1923257 | 1.64E-07 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01553 | - | - | csv:101203987 | 1199.5 |