Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01561 ATGGAGCAAGGTTCTGGGTTTGCCACTTCCTCCCCCGCTTCTCAGCTTTCGGGAGCGTACCTCACAAGAAATTTACTACTTGCATACCAAAGTTTTGGTGTAGTGTATGGAGATTTGAGTACTTCGCCCCTCTATGTTTACTCGAGTACGTTTGCAGGGAAGTTACTGACACATCGAACTGAGGAAGTAGTATTTGGTGCATTTTCCTTGATCTTCTGGACTCTTACACTGATACCATTATTGAAGTATGTATTCATTGTATTGAGCGCAGATGACAATGGTGAAGGAGGAACCTTTGCTCTTTATTCCCTCCTCTGTCGACATGCTAAGTTGAGTTTACTTCCTAACCAACAAGCTGCTGATGAGGAGCTCTCAGCTTATAAATATGGACCATCTTCTCACGTAGTAGCCCCTTCTCCACTAAAAAGGTTTTTGGAAAGGCATAAAACACTTAGGACGGTCTTACTTCTTGTCGTATTATTTGGTGCTTGCATGGTCATTGGTGATGGTGTGCTGACTCCTGCAATTTCAGTTCTATCCTCAGTTTCAGGTTTAAAAGTTACTGAAGCAAAATTGTCCAATGGGACACTCCTTTTGATTGCTTGTGTCATATTGGTTGGTCTGTTTGCTCTGCAGCATTGTGGCACCCATAAGGTTGCGTTTATGTTTGCTCCAATAGTTATCATCTGGTTGTTGTCAATTTTCTCCATTGGTTTGTACAACATAATACATTGGAACCCAAGTATTGTACACGCAATTTCCCCTCATTATGTTATCAAGTTCTTAAGAGTCACCGGTAAAGATGGTTGGCTTTCTCTTGGAGGGGTTCTTCTGGCCATAACTGGTACTGAAGCTATGTTTGCAGATCTTGGTCATTTCACTGCTTTGTCTATAAGGCTTGCTTTTGTATTCATTATCTACCCTTGTTTGGTAGTACAATACATGGGTCAAGCTGCCTTTCTGTCTAAGAACCTTCATTTGTTTCCAAACAGTTTTTATGACTCGATACCTGAAGCTGTGTTTTGGCCTGTTTTTATTATTGCTACCCTGGCGGCTATTGTGGGGAGCCAAGCTGTCATTACTGCTACGTTCTCTATTGTCAAACAATGCCATGCCCTTGGTTGCTTTCCAAGAGTGAAAGTTGTCCACACCTCTAAACACATATATGGGCAGATCTACATCCCAGAAATAAACTGGATATTAATGATCCTTACTCTTTCCATTACGATCGGGTTTCAAGATACGACAATGATTGGAAATGCTTACGGACTCGCTTGCATGACAGTTATGTTCACGACGACATTTCTTATGGCACTTGTCATTGTATTCGTTTGGCAAAAAAGTATCCTGCTGGCTGCACCTTTCATCATCTTCTTCTGGTCTGTCGAGGGTGCCTACTTATCAGCAGCAATCATAAAAGTGCCTCAAGGAGGGTGGGTTCCGCTTGTGCTGTCAGCGTTTTTTATGATTGTTATGTTCGTCTGGCATTATGGCACTCGCAAGAAGTACAACTTTGATCTACACAATAAAGTTTCACTGAAGTGGTTGCTTGGACTAGGCCCGAGTCTTGGTATAGTTCGCGTCCCGGGAATTGGTCTCATATACTCGGAATTGGCAACAGGAGTTCCCGCAATATTTTCTCACTTTGTGACAAATCTCCCTGCGTTTCACAAAGTTTTAGTCTTCGTGTGCGTAAAGTCTGTTCCTGTTCCGTATGTCTCGCCCGAAGAACGTTTTCTCATTGGGAGGGTCTGTCCTAGACCATATCGCATGTATCGGTGCATAGTGAGGTATGGCTACAAGGATATTCAGAAGGATGATGGGGACTTTGAGAACCAGTTGATACTAAACATTGCAGAATTCATTCAAATGGAGGCTGAGGAACCACAATTCTCAAGCTCTGAAAACTCTTCAATCGATGGGAGGATGGCCGTGATAAGCACACGAAGCATACAATCGAACTTAAGCTTCATAGTATCGGGGCACGAAGAAGTTGGTACCAGCAACTCCATCCTCAGCAGCAAATCTGCCACACTCCATAGTTTACGATCCGCCTATGATGACGAGAATCCGCAACTAAGAAGACGCCAGGTACGGTTTCAGCTATCTCCCAGCCCTTCAATAGACCCTAGAGTTAGGGAAGAGTTGATGGACTTGATCCAAGCCAAGGAGGCCGGTGTAGCATATATAATGGGACACTCATATGTCAAGGCTAGAAGATCGTCGTCATACTTGAAAAAGCTCGTAATAGATATCGGGTACTCATTCCTCCGAAAGAACTGTCGAGGCCCATCTGTGGCGCTCAACATCCCTCACATCAGTCTAATTGAAGTGGGGATGATCTATTATGTCTAG 2355 43.52 MEQGSGFATSSPASQLSGAYLTRNLLLAYQSFGVVYGDLSTSPLYVYSSTFAGKLLTHRTEEVVFGAFSLIFWTLTLIPLLKYVFIVLSADDNGEGGTFALYSLLCRHAKLSLLPNQQAADEELSAYKYGPSSHVVAPSPLKRFLERHKTLRTVLLLVVLFGACMVIGDGVLTPAISVLSSVSGLKVTEAKLSNGTLLLIACVILVGLFALQHCGTHKVAFMFAPIVIIWLLSIFSIGLYNIIHWNPSIVHAISPHYVIKFLRVTGKDGWLSLGGVLLAITGTEAMFADLGHFTALSIRLAFVFIIYPCLVVQYMGQAAFLSKNLHLFPNSFYDSIPEAVFWPVFIIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLSITIGFQDTTMIGNAYGLACMTVMFTTTFLMALVIVFVWQKSILLAAPFIIFFWSVEGAYLSAAIIKVPQGGWVPLVLSAFFMIVMFVWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQKDDGDFENQLILNIAEFIQMEAEEPQFSSSENSSIDGRMAVISTRSIQSNLSFIVSGHEEVGTSNSILSSKSATLHSLRSAYDDENPQLRRRQVRFQLSPSPSIDPRVREELMDLIQAKEAGVAYIMGHSYVKARRSSSYLKKLVIDIGYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10170172 10176107 + CmaCh11G015610.1 Cma11g01561 304070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01561 784 TIGRFAM kup: potassium uptake protein 27 784 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma11g01561 784 Pfam K+ potassium transporter 29 602 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma11g01561 784 PANTHER POTASSIUM TRANSPORTER 4 21 784 - -
Cma11g01561 784 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 21 784 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01561 Cma14g00777 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01418 Cma-Chr11:9334841 Cma11g01561 Cma-Chr11:10170172 0 dispersed
Cma11g01561 Cma-Chr11:10170172 Cma14g00637 Cma-Chr14:3160662 0 dispersed
Cma13g00853 Cma-Chr13:7035994 Cma11g01561 Cma-Chr11:10170172 0 dispersed
Cma18g00278 Cma-Chr18:1459966 Cma11g01561 Cma-Chr11:10170172 0 dispersed
Cma01g00681 Cma-Chr1:3563308 Cma11g01561 Cma-Chr11:10170172 0 transposed
Cma11g01561 Cma-Chr11:10170172 Cma14g00777 Cma-Chr14:3875304 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01561 K03549 - csv:101208973 1456.81