Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01618 | ATGGATAACATCACGGCGCAGTTAAAGCGCGGAATCTCCCGCCAATTCTCCACTGGCTCTCTCCGCCATAGTCTCAGCCGCCAATTCTCCCGACAATCCTCTTTAGACCCTCGTCGGAATAATTTAAGATTCAGCTTCGGCCGCCAATCCTCTCTCGACCCTATTCGCCGTTCTCCTGGTGAAGACAATGACCTCTCTGTTCCTGAAAATTTGGACTCCACTATGCAGCTGCTCTTCATGGCTTGCCGTGGCGATGTCCGAGGCGTTCAGGATTTGCTTAATGATGGCACCGATGTTAATAGCATTGATTTGGATGGCCGCACTGCCTTGCATATTGCTGCTTGTGAGGGCCATGCTGAGGTTGTTAAGTTCTTGCTTACCCGTAAGGCTAATATTGATGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCTGATGCTAAATATTATGGGAATATCGAGGTTTACACCATTTTAAAGGCTCGTGGAGCAAAAGTTCAGAGTATTAGGAAGACACCAATGACTGTTGCAAATCCCAGGGAAGTTCCTGAGTATGAGCTTAATCCATCGGAGCTTCAGATTCGAAGGGGTGACGGTATATCAAAGGGGACATATCAAGTTGCCAAATGGAATGGTACAAAAGTGGCTGTGAAAATTCTTGATAAGGATTGTTATTTTAATCCGGATTCTATAAATGCATTCAAACACGAGTTGACGTTACTCGAAAGGGTTCGACATCCGAACGTAGTTCAGTTTGTCGGGGCCGTTACACAGAATTTGCCGATGATGATCGTTTCGGAATACCATCCAATGGGTGATTTAGGTTTCTATCTTCAAAAGAAAGGTCGTTTATCTCCTTCTAAAGCCTTACGATTCGCCCTCGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGATCCTATTATCCACTGCGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCATGATAAGATTGTCAAAAATGTCTCCTGATAAAGCAAAACTAGCTCAGCCAATGGTTACCGACTCTTCGAACTTGTACTTAGCTCCCGAGATTTACAACGACGAAGTATTTGACAGAAGCGTCGATGCGTTTTCGTTTGGTCTCATTCTATACGAGATGGTTGAAGGTATGCAGCCATTCCATCCTAGGCCTCCGGAAGAGTCGTCGAAAGCTATGTGTGTCGAACGAAAGAGACCTCCGTTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGCTCCGGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTAGATAAAATAGTTGCCAACTGCTCGAAACAAGGATGGTGGAAAGACACGTTTAAACTTCCCTGGAAATAA | 1422 | 44.51 | MDNITAQLKRGISRQFSTGSLRHSLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRSPGEDNDLSVPENLDSTMQLLFMACRGDVRGVQDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKFLLTRKANIDARDRWGSTAAADAKYYGNIEVYTILKARGAKVQSIRKTPMTVANPREVPEYELNPSELQIRRGDGISKGTYQVAKWNGTKVAVKILDKDCYFNPDSINAFKHELTLLERVRHPNVVQFVGAVTQNLPMMIVSEYHPMGDLGFYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGMIRLSKMSPDKAKLAQPMVTDSSNLYLAPEIYNDEVFDRSVDAFSFGLILYEMVEGMQPFHPRPPEESSKAMCVERKRPPFKIKSKSYPPDLKELIEECWAPEPVVRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWK | 473 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10635588 | 10640890 | - | CmaCh11G016180.1 | Cma11g01618 | 304127 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01618 | 473 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 33 | 471 | - | - | |
Cma11g01618 | 473 | SMART | serkin_6 | 193 | 455 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01618 | 473 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 310 | 322 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01618 | 473 | Gene3D | - | 48 | 184 | IPR036770 | - | |
Cma11g01618 | 473 | PIRSF | ILK | 8 | 472 | - | - | |
Cma11g01618 | 473 | ProSiteProfiles | Protein kinase domain profile. | 189 | 455 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01618 | 473 | SUPERFAMILY | Protein kinase-like (PK-like) | 200 | 451 | IPR011009 | - | |
Cma11g01618 | 473 | ProSiteProfiles | Ankyrin repeat region circular profile. | 105 | 137 | - | - | |
Cma11g01618 | 473 | Gene3D | Transferase(Phosphotransferase) domain 1 | 271 | 467 | - | - | |
Cma11g01618 | 473 | SMART | ANK_2a | 73 | 101 | IPR002110 | GO:0005515 | |
Cma11g01618 | 473 | SMART | ANK_2a | 105 | 134 | IPR002110 | GO:0005515 | |
Cma11g01618 | 473 | Gene3D | Phosphorylase Kinase; domain 1 | 185 | 268 | - | - | |
Cma11g01618 | 473 | SUPERFAMILY | Ankyrin repeat | 73 | 172 | IPR036770 | - | |
Cma11g01618 | 473 | CDD | STKc_MAP3K-like | 199 | 451 | - | - | |
Cma11g01618 | 473 | ProSiteProfiles | Ankyrin repeat profile. | 105 | 137 | IPR002110 | GO:0005515 | |
Cma11g01618 | 473 | Pfam | Ankyrin repeats (3 copies) | 80 | 165 | IPR002110 | GO:0005515 | |
Cma11g01618 | 473 | Pfam | Protein tyrosine and serine/threonine kinase | 199 | 450 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01618 | 473 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE | 33 | 471 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01618 | Cma-Chr11:10635588 | Cma18g00441 | Cma-Chr18:2435883 | 1.07E-128 | dispersed | |
Cma12g00587 | Cma-Chr12:3066141 | Cma11g01618 | Cma-Chr11:10635588 | 1.91E-06 | transposed | |
Cma11g01618 | Cma-Chr11:10635588 | Cma19g00288 | Cma-Chr19:2190850 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68921 | PF07714 | PK_Tyr_Ser-Thr | 7.00E-49 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01618 | - | - | cpep:111792150 | 928.317 |