Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01618 ATGGATAACATCACGGCGCAGTTAAAGCGCGGAATCTCCCGCCAATTCTCCACTGGCTCTCTCCGCCATAGTCTCAGCCGCCAATTCTCCCGACAATCCTCTTTAGACCCTCGTCGGAATAATTTAAGATTCAGCTTCGGCCGCCAATCCTCTCTCGACCCTATTCGCCGTTCTCCTGGTGAAGACAATGACCTCTCTGTTCCTGAAAATTTGGACTCCACTATGCAGCTGCTCTTCATGGCTTGCCGTGGCGATGTCCGAGGCGTTCAGGATTTGCTTAATGATGGCACCGATGTTAATAGCATTGATTTGGATGGCCGCACTGCCTTGCATATTGCTGCTTGTGAGGGCCATGCTGAGGTTGTTAAGTTCTTGCTTACCCGTAAGGCTAATATTGATGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCTGATGCTAAATATTATGGGAATATCGAGGTTTACACCATTTTAAAGGCTCGTGGAGCAAAAGTTCAGAGTATTAGGAAGACACCAATGACTGTTGCAAATCCCAGGGAAGTTCCTGAGTATGAGCTTAATCCATCGGAGCTTCAGATTCGAAGGGGTGACGGTATATCAAAGGGGACATATCAAGTTGCCAAATGGAATGGTACAAAAGTGGCTGTGAAAATTCTTGATAAGGATTGTTATTTTAATCCGGATTCTATAAATGCATTCAAACACGAGTTGACGTTACTCGAAAGGGTTCGACATCCGAACGTAGTTCAGTTTGTCGGGGCCGTTACACAGAATTTGCCGATGATGATCGTTTCGGAATACCATCCAATGGGTGATTTAGGTTTCTATCTTCAAAAGAAAGGTCGTTTATCTCCTTCTAAAGCCTTACGATTCGCCCTCGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGATCCTATTATCCACTGCGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCATGATAAGATTGTCAAAAATGTCTCCTGATAAAGCAAAACTAGCTCAGCCAATGGTTACCGACTCTTCGAACTTGTACTTAGCTCCCGAGATTTACAACGACGAAGTATTTGACAGAAGCGTCGATGCGTTTTCGTTTGGTCTCATTCTATACGAGATGGTTGAAGGTATGCAGCCATTCCATCCTAGGCCTCCGGAAGAGTCGTCGAAAGCTATGTGTGTCGAACGAAAGAGACCTCCGTTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGCTCCGGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTAGATAAAATAGTTGCCAACTGCTCGAAACAAGGATGGTGGAAAGACACGTTTAAACTTCCCTGGAAATAA 1422 44.51 MDNITAQLKRGISRQFSTGSLRHSLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRSPGEDNDLSVPENLDSTMQLLFMACRGDVRGVQDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKFLLTRKANIDARDRWGSTAAADAKYYGNIEVYTILKARGAKVQSIRKTPMTVANPREVPEYELNPSELQIRRGDGISKGTYQVAKWNGTKVAVKILDKDCYFNPDSINAFKHELTLLERVRHPNVVQFVGAVTQNLPMMIVSEYHPMGDLGFYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGMIRLSKMSPDKAKLAQPMVTDSSNLYLAPEIYNDEVFDRSVDAFSFGLILYEMVEGMQPFHPRPPEESSKAMCVERKRPPFKIKSKSYPPDLKELIEECWAPEPVVRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWK 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10635588 10640890 - CmaCh11G016180.1 Cma11g01618 304127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01618 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 471 - -
Cma11g01618 473 SMART serkin_6 193 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01618 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Cma11g01618 473 Gene3D - 48 184 IPR036770 -
Cma11g01618 473 PIRSF ILK 8 472 - -
Cma11g01618 473 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01618 473 SUPERFAMILY Protein kinase-like (PK-like) 200 451 IPR011009 -
Cma11g01618 473 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Cma11g01618 473 Gene3D Transferase(Phosphotransferase) domain 1 271 467 - -
Cma11g01618 473 SMART ANK_2a 73 101 IPR002110 GO:0005515
Cma11g01618 473 SMART ANK_2a 105 134 IPR002110 GO:0005515
Cma11g01618 473 Gene3D Phosphorylase Kinase; domain 1 185 268 - -
Cma11g01618 473 SUPERFAMILY Ankyrin repeat 73 172 IPR036770 -
Cma11g01618 473 CDD STKc_MAP3K-like 199 451 - -
Cma11g01618 473 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Cma11g01618 473 Pfam Ankyrin repeats (3 copies) 80 165 IPR002110 GO:0005515
Cma11g01618 473 Pfam Protein tyrosine and serine/threonine kinase 199 450 IPR001245 GO:0004672|GO:0006468
Cma11g01618 473 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01618 Cma-Chr11:10635588 Cma18g00441 Cma-Chr18:2435883 1.07E-128 dispersed
Cma12g00587 Cma-Chr12:3066141 Cma11g01618 Cma-Chr11:10635588 1.91E-06 transposed
Cma11g01618 Cma-Chr11:10635588 Cma19g00288 Cma-Chr19:2190850 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68921 PF07714 PK_Tyr_Ser-Thr 7.00E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01618 - - cpep:111792150 928.317