Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01619 | ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCCCAGCAGGCTGCAGGCGGTGTTGGTGCAGGACAATTACCATATTCTAATCCTTACCAAACAGCTCCAATGGGGGCGTCTGGAACGCCTGCTATTACGATTCCCCCGACTCAGCAACCATCCAGTTTCTCCAACTCTCCACACCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCAGCAGCAGCAGCAACAACAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAGGCTTCTATTCCTGTAGTTGGTTCCCCGGCCGATCTTCCTTATTACTATGTTCCATCACAACATCCAGTGAGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACTGCTCAACAGCCCCGACCTCCGATACCTTTCATGCCATGGCCGCATACTCAAGCTCAGCAGCAGCAGCAGCAACAACAAACTCAGCAGCAAAGTGACGCATAG | 810 | 47.28 | MDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPHQLAFQQAQHFHQQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYGATAQQPRPPIPFMPWPHTQAQQQQQQQQTQQQSDA | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10651697 | 10652506 | + | CmaCh11G016190.1 | Cma11g01619 | 304128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01619 | 269 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 9 | 258 | - | - | |
Cma11g01619 | 269 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cma11g01619 | 269 | MobiDBLite | consensus disorder prediction | 250 | 269 | - | - | |
Cma11g01619 | 269 | MobiDBLite | consensus disorder prediction | 26 | 76 | - | - | |
Cma11g01619 | 269 | Pfam | Core histone H2A/H2B/H3/H4 | 51 | 166 | IPR007125 | GO:0003677 | |
Cma11g01619 | 269 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Cma11g01619 | 269 | MobiDBLite | consensus disorder prediction | 236 | 269 | - | - | |
Cma11g01619 | 269 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 9 | 258 | - | - | |
Cma11g01619 | 269 | SUPERFAMILY | Histone-fold | 62 | 175 | IPR009072 | GO:0046982 | |
Cma11g01619 | 269 | Gene3D | Histone, subunit A | 64 | 181 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01619 | Cma-Chr11:10651697 | Cma16g00588 | Cma-Chr16:3040853 | 1.59E-22 | dispersed | |
Cma20g00479 | Cma-Chr20:2315902 | Cma11g01619 | Cma-Chr11:10651697 | 2.12E-08 | dispersed | |
Cma10g01076 | Cma-Chr10:6907923 | Cma11g01619 | Cma-Chr11:10651697 | 6.66E-79 | transposed | |
Cma11g01124 | Cma-Chr11:6367027 | Cma11g01619 | Cma-Chr11:10651697 | 6.08E-80 | transposed | |
Cma11g01619 | Cma-Chr11:10651697 | Cma19g00286 | Cma-Chr19:2160452 | 2.98E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35904 | PF00125 | Histone | 1.00E-17 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01619 | K08066 | - | csv:101213813 | 414.075 |