Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01619 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCCCAGCAGGCTGCAGGCGGTGTTGGTGCAGGACAATTACCATATTCTAATCCTTACCAAACAGCTCCAATGGGGGCGTCTGGAACGCCTGCTATTACGATTCCCCCGACTCAGCAACCATCCAGTTTCTCCAACTCTCCACACCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCAGCAGCAGCAGCAACAACAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTTGCAAAGGCGTGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAGGCTTCTATTCCTGTAGTTGGTTCCCCGGCCGATCTTCCTTATTACTATGTTCCATCACAACATCCAGTGAGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACTGCTCAACAGCCCCGACCTCCGATACCTTTCATGCCATGGCCGCATACTCAAGCTCAGCAGCAGCAGCAGCAACAACAAACTCAGCAGCAAAGTGACGCATAG 810 47.28 MDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPHQLAFQQAQHFHQQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYGATAQQPRPPIPFMPWPHTQAQQQQQQQQTQQQSDA 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10651697 10652506 + CmaCh11G016190.1 Cma11g01619 304128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01619 269 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 258 - -
Cma11g01619 269 MobiDBLite consensus disorder prediction 1 19 - -
Cma11g01619 269 MobiDBLite consensus disorder prediction 250 269 - -
Cma11g01619 269 MobiDBLite consensus disorder prediction 26 76 - -
Cma11g01619 269 Pfam Core histone H2A/H2B/H3/H4 51 166 IPR007125 GO:0003677
Cma11g01619 269 MobiDBLite consensus disorder prediction 1 76 - -
Cma11g01619 269 MobiDBLite consensus disorder prediction 236 269 - -
Cma11g01619 269 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 258 - -
Cma11g01619 269 SUPERFAMILY Histone-fold 62 175 IPR009072 GO:0046982
Cma11g01619 269 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01619 Cma-Chr11:10651697 Cma16g00588 Cma-Chr16:3040853 1.59E-22 dispersed
Cma20g00479 Cma-Chr20:2315902 Cma11g01619 Cma-Chr11:10651697 2.12E-08 dispersed
Cma10g01076 Cma-Chr10:6907923 Cma11g01619 Cma-Chr11:10651697 6.66E-79 transposed
Cma11g01124 Cma-Chr11:6367027 Cma11g01619 Cma-Chr11:10651697 6.08E-80 transposed
Cma11g01619 Cma-Chr11:10651697 Cma19g00286 Cma-Chr19:2160452 2.98E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35904 PF00125 Histone 1.00E-17 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01619 K08066 - csv:101213813 414.075