Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01622 ATGGCAGATGGTGAAGATATCCAACCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCCGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATTGTTGGTCGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAAAAGGATGCATATGTTGGGGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTGAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAACATCCGGTCCTTCTTACTGAAGCACCGCTCAACCCGAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACATTCGACGTCCCCGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACAGTGCCAATATACGAGGGGTTTTCTCTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATCTGACTGATGCTTTAATGAAAATTCTCACCGAAAGAGGTTACATGTTCACGACAACAGCCGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTACGAGCAAGAACTGGAGACAGCCAAGACTAGTTCGGCCATTGAGAAAAGCTACGAACTACCAGACGGGCAGGTAATTACAATCGGAGCTGAGAGATTCCGTTGCCCTGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCTCCTGGAATCCATGAAACCACGTATAACTCCATCATGAAGTGTGATGTCGATATCAGGAAAGACTTATATGGTAACATCGTCCTCAGTGGTGGGTCAACGATGTTCCCCGGCATTGCTGATCGTATGAGCAAAGAAATTACCGCTCTTGCTCCGAGCAGCATGAAGATTAAGGTTGTTGCTCCTCCAGAAAGGAAATACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACAAAGGCCGAATACGATGAGTCGGGTCCCGCTATCGTTCACAGGAAATGCTTCTGA 1134 47.44 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETAKTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10676826 10680053 + CmaCh11G016220.1 Cma11g01622 304131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01622 377 Gene3D - 140 340 - -
Cma11g01622 377 PANTHER ACTIN-2-LIKE 1 376 - -
Cma11g01622 377 PANTHER ACTIN 1 376 IPR004000 -
Cma11g01622 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cma11g01622 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cma11g01622 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cma11g01622 377 Pfam Actin 5 377 IPR004000 -
Cma11g01622 377 Gene3D - 10 371 - -
Cma11g01622 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cma11g01622 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cma11g01622 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cma11g01622 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cma11g01622 377 PRINTS Actin signature 28 37 IPR004000 -
Cma11g01622 377 PRINTS Actin signature 51 62 IPR004000 -
Cma11g01622 377 PRINTS Actin signature 63 85 IPR004000 -
Cma11g01622 377 PRINTS Actin signature 117 130 IPR004000 -
Cma11g01622 377 PRINTS Actin signature 142 161 IPR004000 -
Cma11g01622 377 PRINTS Actin signature 238 254 IPR004000 -
Cma11g01622 377 SMART actin_3 7 377 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01622 Cma-Chr11:10676826 Cma20g01073 Cma-Chr20:8126203 0 dispersed
Cma11g01622 Cma-Chr11:10676826 Cma19g00282 Cma-Chr19:2115699 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01622 K10355 - csv:101214459 753.051