Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01642 ATGGCTGCAACTTCTGGTGCTCTGCTTAATGGGTTGGGCTCACCCTTCCTCCATGGAGGTAGCAGAACCCAAACCTTGCTGGCCGGTGCCAGAGGCGGTGTCAATGTTGTCAGCTCCCGCAAGCTTGTCATCGTCGCTGCTGCTCAGCCCAAGAAGTCTTGGATCCCTGCTGTTAAGGGTGGCGGCAACTTCATCGACCCGGAATGGCTCGATGGCTCACTACCAGGCGACTACGGCTTCGACCCACTGGGGTTGGGGAAGGATCCAGCATTTCTGAAATGGTACAGAGAAGCAGAGCTAATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCATCGGCCAGGCCTGGAGCGGGATTCCATGGTTCGAAGCCGGAGCCGATCCGTCCGCAATCGCTCCATTCTCCTTCGGATCCCTGCTCGGAACCCAGCTTCTGCTAATGGGATGGGTCGAGAGCAAACGATGGGTAGATTTCTTCAACCCGGAGTCTCAATCCGTCGAATGGGCAACGCCATGGTCGAGGACCGCAGAGAACTTCGCAAACGCAACGGGAGAACAGGGGTACCCAGGAGGGAAATTCTTCGATCCATTGGGATTTGCGGGAACTCTTAAGGATGGAGTTTATATTCCAGACACGGAGAAATTGGAGAGATTGAAGTTGGCGGAGATCAAGCATGCTAGAATCGCCATGTTAGCTATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCATTGGGGGCTCTTGGATTGTAG 768 55.21 MAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10800460 10802592 + CmaCh11G016420.1 Cma11g01642 304151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01642 255 Gene3D Chlorophyll a/b binding protein domain 67 254 - -
Cma11g01642 255 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 255 IPR001344 GO:0009765|GO:0016020
Cma11g01642 255 SUPERFAMILY Chlorophyll a-b binding protein 64 255 - -
Cma11g01642 255 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 255 - -
Cma11g01642 255 Pfam Chlorophyll A-B binding protein 67 243 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01642 Cma-Chr11:10800460 Cma15g00603 Cma-Chr15:2856967 7.69E-180 dispersed
Cma11g01642 Cma-Chr11:10800460 Cma04g01836 Cma-Chr4:9264652 7.70E-35 transposed
Cma11g01642 Cma-Chr11:10800460 Cma18g00694 Cma-Chr18:6352027 1.62E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01642 K08917 - csv:101204705 500.745