Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01650 ATGGCGGACCGTGGATCTTACGGCCTGGCTCCTCGTCTAGACATCGATCAGTTATTGATAGAAGCAAGACATCGTTGGCTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCGAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGAAAGGTTCTGAGGTACTTCAGAAAGGATGGACACAAATGGAGGAAGAAGAAAGATGGCAAAACCGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTAAAGGGTAATAGAACCAATATTGGAGCTGTTGTTGAGACAGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCCTATGAGTTCTAGCTATTCCAGCAGTCGTAATCAAGCAGCTTTTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTGTGACATCATCATATGAAGATGCTGATAATGAAGACACTTACCAAGAAACTTCAAGATTTCACTCATTTCCAACATCACCACTAGTGAACAATGGTCTTCTGGTGAATAAAAAAGAAGCTGGTCCATCAAATCTTTACTTTCCACATTCCTCTTCCAATAATGTTGAAGCTTGGCCATTGGCTCCTGCCGTGGAATATGTACCACAAGTTCAGAAAGATGGACTTGGGAGTAGTGATGGTGGTACAGGTGTGATTGGTTCTCAGAAGACACTCACCTCTGCCTCGTGGGAAGAGATCTTTCAACAATGCACAACTGGATTTCAAACAGTACCTTCTCAGGTTTTAAACTCTTGGATTGAACCTTTATCTTCTGGAACTGTCCTTGGACAGGATAATTCAATTCCTGGCAAGCTTTTAGCCGGTAATAGTGCTATTAAAGAGGACTTTAAGAGCTCACTGACAATGGCATCGAACTGTCAGGTTCCTTTTGAAGACAATACTTCATCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGATATCAATGGCAAGTTAACTGAGCAGAAATCTCATAATGCAACCTTTGGAAGTGGTCATGCTCATCCTAGCATAGAGAATAAGGAGTTTTTTTCAAAAAACTTCGAACCACAGTTCAATGAAGGAGAATTGTATTCTGCAACAAGGTTGAATTCTGAAAATGATATATCTAAAGAAGGTTCCATCAGCTATTCTTTGGCTTTGAAACAATCATTAGTAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGTTTCTCACGGTGGGTATCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACTGTAGAATGTGGTGATATGGTGGATGATTCGTCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCGAAGTCGACACTTCTAGATTTAGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGCCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTGTGCTGTCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGCGAGGTGCGTGAATTTGATTACCTGGCTGACTCTGCTCAAGATGTAGATGTTACCGATGTATATACCGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGTTACTATCCACTAGATCTTCAGATCCTCCAAATAATCTCTCAGAAGGTGCCTTGGAGAAACGGAACTTGATCAAAAAGCTCATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAAATCAGCATCAAAGCAAGGAATCTCTTTTTATAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATACGTAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGACAGGGATTAATTCATTTAGCTGCAGCTCTTGGCTATGATTGGGCAATCAGACCAATTGTAGCTACTGGAGTGAGTCTGAATTTTAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCATTCTATGGCAGGGAGTTGACAGTTGGAACTCTTATAACTTTGGGCGCCGATCCTGGATTGCCGTCAGATCCATCTCCAGGCGATCCTTCGGGCACAATGCCTGCAGACCTTGCTTCTGAAAGGGGACAGAAGGGGATCGCTGGTTTTCTAGCGGAGTCGTCATTGACCAGCTACATCTCATCTGTATCAATGGCAGATACCAAAAAAGATGGTGTGCTAGATGCTTCAGAAGGGAAAGCTGTGTATACCGCTGCTGAACGAAAAGCAACACCAATAAATGATGGTCTTATGCCTGGTGATTTGTCCTTGAAGGATTCGTTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGATCGTATACATCTGATGTTTCGAGTAAAGTCATTTCAGAGGAAGCAAATATCAGAGCGTGGACCTGATGAATTTGGATACTCAGATGATAGTGCTATTCCGTTTGTTGCTGCCAGGGCACGCAAGTCTCGACTAAGTAACAGCCCAGACCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCATTGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATTGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGATCAGATACAGTTGCCAAGACTCCGCCCTCTGTGGTGATGGAACCACGTGAAGAGGATGACGGAGATTTTTTGAAGAAAGGAAGAAGACAGACTGAGGAAAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGGGACCAATACCGTAGGCTACTTACCGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATAAGTGTTACTAGTACTTCAGAAGAGATAATAGAAGGTGATGACATGATTGATATCGACTCACTGCTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA 3276 42.28 MADRGSYGLAPRLDIDQLLIEARHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPMSSSYSSSRNQAAFENADSPSPTSTVTSSYEDADNEDTYQETSRFHSFPTSPLVNNGLLVNKKEAGPSNLYFPHSSSNNVEAWPLAPAVEYVPQVQKDGLGSSDGGTGVIGSQKTLTSASWEEIFQQCTTGFQTVPSQVLNSWIEPLSSGTVLGQDNSIPGKLLAGNSAIKEDFKSSLTMASNCQVPFEDNTSSFSKGHVDQFPDLYSVYDINGKLTEQKSHNATFGSGHAHPSIENKEFFSKNFEPQFNEGELYSATRLNSENDISKEGSISYSLALKQSLVDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSITDFSPKSTLLDLETEVVIIGKFLGNNHATKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLADSAQDVDVTDVYTAGATEELHMHLRFERLLSTRSSDPPNNLSEGALEKRNLIKKLISIKEEEDCYGEEPNSQNDQNQHQSKESLFIKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSLNFRDVNGWTALHWAAFYGRELTVGTLITLGADPGLPSDPSPGDPSGTMPADLASERGQKGIAGFLAESSLTSYISSVSMADTKKDGVLDASEGKAVYTAAERKATPINDGLMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRKQISERGPDEFGYSDDSAIPFVAARARKSRLSNSPDHAAAVHIQKKFRGWKMRKEFLLIRQRIVKIQAIVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDTVAKTPPSVVMEPREEDDGDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNISVTSTSEEIIEGDDMIDIDSLLDDDALMSMTFD 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10856550 10871355 + CmaCh11G016500.1 Cma11g01650 304159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01650 1091 ProSiteProfiles IQ motif profile. 914 943 IPR000048 GO:0005515
Cma11g01650 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1091 - -
Cma11g01650 1091 SUPERFAMILY E set domains 505 589 IPR014756 -
Cma11g01650 1091 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cma11g01650 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 964 IPR027417 -
Cma11g01650 1091 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cma11g01650 1091 Pfam IQ calmodulin-binding motif 939 958 IPR000048 GO:0005515
Cma11g01650 1091 Pfam IQ calmodulin-binding motif 915 934 IPR000048 GO:0005515
Cma11g01650 1091 Gene3D Immunoglobulins 498 594 IPR013783 -
Cma11g01650 1091 ProSiteProfiles IQ motif profile. 937 961 IPR000048 GO:0005515
Cma11g01650 1091 CDD IPT 504 590 - -
Cma11g01650 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1091 - -
Cma11g01650 1091 SMART iq_5 913 935 IPR000048 GO:0005515
Cma11g01650 1091 SMART iq_5 936 958 IPR000048 GO:0005515
Cma11g01650 1091 Gene3D - 660 808 IPR036770 -
Cma11g01650 1091 Pfam IPT/TIG domain 504 582 IPR002909 -
Cma11g01650 1091 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Cma11g01650 1091 MobiDBLite consensus disorder prediction 147 193 - -
Cma11g01650 1091 MobiDBLite consensus disorder prediction 147 208 - -
Cma11g01650 1091 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cma11g01650 1091 SUPERFAMILY Ankyrin repeat 683 799 IPR036770 -
Cma11g01650 1091 Gene3D - 914 961 - -
Cma11g01650 1091 MobiDBLite consensus disorder prediction 764 784 - -
Cma11g01650 1091 ProSiteProfiles Ankyrin repeat region circular profile. 738 764 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01650 Cma-Chr11:10856550 Cma16g00713 Cma-Chr16:3713192 5.44E-67 dispersed
Cma11g01650 Cma-Chr11:10856550 Cma19g00254 Cma-Chr19:1804145 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35906 PF03859 CG-1 4.80E-50 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01650 K21596 - csv:101203707 1690.24