Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01650 ATGGCGGACCGTGGATCTTACGGCCTGGCTCCTCGTCTAGACATCGATCAGTTATTGATAGAAGCAAGACATCGTTGGCTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCGAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGAAAGGTTCTGAGGTACTTCAGAAAGGATGGACACAAATGGAGGAAGAAGAAAGATGGCAAAACCGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTAAAGGGTAATAGAACCAATATTGGAGCTGTTGTTGAGACAGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCCTATGAGTTCTAGCTATTCCAGCAGTCGTAATCAAGCAGCTTTTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTGTGACATCATCATATGAAGATGCTGATAATGAAGACACTTACCAAGAAACTTCAAGATTTCACTCATTTCCAACATCACCACTAGTGAACAATGGTCTTCTGGTGAATAAAAAAGAAGCTGGTCCATCAAATCTTTACTTTCCACATTCCTCTTCCAATAATGTTGAAGCTTGGCCATTGGCTCCTGCCGTGGAATATGTACCACAAGTTCAGAAAGATGGACTTGGGAGTAGTGATGGTGGTACAGGTGTGATTGGTTCTCAGAAGACACTCACCTCTGCCTCGTGGGAAGAGATCTTTCAACAATGCACAACTGGATTTCAAACAGTACCTTCTCAGGTTTTAAACTCTTGGATTGAACCTTTATCTTCTGGAACTGTCCTTGGACAGGATAATTCAATTCCTGGCAAGCTTTTAGCCGGTAATAGTGCTATTAAAGAGGACTTTAAGAGCTCACTGACAATGGCATCGAACTGTCAGGTTCCTTTTGAAGACAATACTTCATCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGATATCAATGGCAAGTTAACTGAGCAGAAATCTCATAATGCAACCTTTGGAAGTGGTCATGCTCATCCTAGCATAGAGAATAAGGAGTTTTTTTCAAAAAACTTCGAACCACAGTTCAATGAAGGAGAATTGTATTCTGCAACAAGGTTGAATTCTGAAAATGATATATCTAAAGAAGGTTCCATCAGCTATTCTTTGGCTTTGAAACAATCATTAGTAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGTTTCTCACGGTGGGTATCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACTGTAGAATGTGGTGATATGGTGGATGATTCGTCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCGAAGTCGACACTTCTAGATTTAGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGCCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTGTGCTGTCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGCGAGGTGCGTGAATTTGATTACCTGGCTGACTCTGCTCAAGATGTAGATGTTACCGATGTATATACCGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGTTACTATCCACTAGATCTTCAGATCCTCCAAATAATCTCTCAGAAGGTGCCTTGGAGAAACGGAACTTGATCAAAAAGCTCATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAAATCAGCATCAAAGCAAGGAATCTCTTTTTATAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATACGTAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGACAGGGATTAATTCATTTAGCTGCAGCTCTTGGCTATGATTGGGCAATCAGACCAATTGTAGCTACTGGAGTGAGTCTGAATTTTAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCATTCTATGGCAGGGAGTTGACAGTTGGAACTCTTATAACTTTGGGCGCCGATCCTGGATTGCCGTCAGATCCATCTCCAGGCGATCCTTCGGGCACAATGCCTGCAGACCTTGCTTCTGAAAGGGGACAGAAGGGGATCGCTGGTTTTCTAGCGGAGTCGTCATTGACCAGCTACATCTCATCTGTATCAATGGCAGATACCAAAAAAGATGGTGTGCTAGATGCTTCAGAAGGGAAAGCTGTGTATACCGCTGCTGAACGAAAAGCAACACCAATAAATGATGGTCTTATGCCTGGTGATTTGTCCTTGAAGGATTCGTTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGATCGTATACATCTGATGTTTCGAGTAAAGTCATTTCAGAGGAAGCAAATATCAGAGCGTGGACCTGATGAATTTGGATACTCAGATGATAGTGCTATTCCGTTTGTTGCTGCCAGGGCACGCAAGTCTCGACTAAGTAACAGCCCAGACCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCATTGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATTGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGATCAGATACAGTTGCCAAGACTCCGCCCTCTGTGGTGATGGAACCACGTGAAGAGGATGACGGAGATTTTTTGAAGAAAGGAAGAAGACAGACTGAGGAAAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGGGACCAATACCGTAGGCTACTTACCGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATAAGTGTTACTAGTACTTCAGAAGAGATAATAGAAGGTGATGACATGATTGATATCGACTCACTGCTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA 3276 42.28 MADRGSYGLAPRLDIDQLLIEARHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPMSSSYSSSRNQAAFENADSPSPTSTVTSSYEDADNEDTYQETSRFHSFPTSPLVNNGLLVNKKEAGPSNLYFPHSSSNNVEAWPLAPAVEYVPQVQKDGLGSSDGGTGVIGSQKTLTSASWEEIFQQCTTGFQTVPSQVLNSWIEPLSSGTVLGQDNSIPGKLLAGNSAIKEDFKSSLTMASNCQVPFEDNTSSFSKGHVDQFPDLYSVYDINGKLTEQKSHNATFGSGHAHPSIENKEFFSKNFEPQFNEGELYSATRLNSENDISKEGSISYSLALKQSLVDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSITDFSPKSTLLDLETEVVIIGKFLGNNHATKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLADSAQDVDVTDVYTAGATEELHMHLRFERLLSTRSSDPPNNLSEGALEKRNLIKKLISIKEEEDCYGEEPNSQNDQNQHQSKESLFIKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSLNFRDVNGWTALHWAAFYGRELTVGTLITLGADPGLPSDPSPGDPSGTMPADLASERGQKGIAGFLAESSLTSYISSVSMADTKKDGVLDASEGKAVYTAAERKATPINDGLMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRKQISERGPDEFGYSDDSAIPFVAARARKSRLSNSPDHAAAVHIQKKFRGWKMRKEFLLIRQRIVKIQAIVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDTVAKTPPSVVMEPREEDDGDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNISVTSTSEEIIEGDDMIDIDSLLDDDALMSMTFD 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10856550 10871355 + CmaCh11G016500.1 Cma11g01650 304159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01650 1091 ProSiteProfiles IQ motif profile. 914 943 IPR000048 GO:0005515
Cma11g01650 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1091 - -
Cma11g01650 1091 SUPERFAMILY E set domains 505 589 IPR014756 -
Cma11g01650 1091 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cma11g01650 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 964 IPR027417 -
Cma11g01650 1091 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cma11g01650 1091 Pfam IQ calmodulin-binding motif 939 958 IPR000048 GO:0005515
Cma11g01650 1091 Pfam IQ calmodulin-binding motif 915 934 IPR000048 GO:0005515
Cma11g01650 1091 Gene3D Immunoglobulins 498 594 IPR013783 -
Cma11g01650 1091 ProSiteProfiles IQ motif profile. 937 961 IPR000048 GO:0005515
Cma11g01650 1091 CDD IPT 504 590 - -
Cma11g01650 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1091 - -
Cma11g01650 1091 SMART iq_5 913 935 IPR000048 GO:0005515
Cma11g01650 1091 SMART iq_5 936 958 IPR000048 GO:0005515
Cma11g01650 1091 Gene3D - 660 808 IPR036770 -
Cma11g01650 1091 Pfam IPT/TIG domain 504 582 IPR002909 -
Cma11g01650 1091 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Cma11g01650 1091 MobiDBLite consensus disorder prediction 147 193 - -
Cma11g01650 1091 MobiDBLite consensus disorder prediction 147 208 - -
Cma11g01650 1091 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cma11g01650 1091 SUPERFAMILY Ankyrin repeat 683 799 IPR036770 -
Cma11g01650 1091 Gene3D - 914 961 - -
Cma11g01650 1091 MobiDBLite consensus disorder prediction 764 784 - -
Cma11g01650 1091 ProSiteProfiles Ankyrin repeat region circular profile. 738 764 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01650 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1690.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01650 Cma-Chr11:10856550 Cma16g00713 Cma-Chr16:3713192 5.44E-67 dispersed
Cma11g01650 Cma-Chr11:10856550 Cma19g00254 Cma-Chr19:1804145 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35906 PF03859 CG-1 4.80E-50 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01650 Cma_Chr11 FPKM 19.125135 20.989214 16.599869 17.401407 15.524805 15.856525 17.156733 18.146729 16.42914 18.36845