Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01650 | ATGGCGGACCGTGGATCTTACGGCCTGGCTCCTCGTCTAGACATCGATCAGTTATTGATAGAAGCAAGACATCGTTGGCTGCGTCCAGCTGAAATTTGTGAAATACTTCGTAACTATCCGAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCAAGTGGGTCACTTTTTCTTTTTGATCGAAAGGTTCTGAGGTACTTCAGAAAGGATGGACACAAATGGAGGAAGAAGAAAGATGGCAAAACCGTAAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTACTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTAAAGGGTAATAGAACCAATATTGGAGCTGTTGTTGAGACAGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCCTATGAGTTCTAGCTATTCCAGCAGTCGTAATCAAGCAGCTTTTGAAAATGCAGATTCCCCCAGCCCAACCAGCACTGTGACATCATCATATGAAGATGCTGATAATGAAGACACTTACCAAGAAACTTCAAGATTTCACTCATTTCCAACATCACCACTAGTGAACAATGGTCTTCTGGTGAATAAAAAAGAAGCTGGTCCATCAAATCTTTACTTTCCACATTCCTCTTCCAATAATGTTGAAGCTTGGCCATTGGCTCCTGCCGTGGAATATGTACCACAAGTTCAGAAAGATGGACTTGGGAGTAGTGATGGTGGTACAGGTGTGATTGGTTCTCAGAAGACACTCACCTCTGCCTCGTGGGAAGAGATCTTTCAACAATGCACAACTGGATTTCAAACAGTACCTTCTCAGGTTTTAAACTCTTGGATTGAACCTTTATCTTCTGGAACTGTCCTTGGACAGGATAATTCAATTCCTGGCAAGCTTTTAGCCGGTAATAGTGCTATTAAAGAGGACTTTAAGAGCTCACTGACAATGGCATCGAACTGTCAGGTTCCTTTTGAAGACAATACTTCATCCTTTTCAAAAGGGCACGTTGACCAGTTTCCAGATTTATATTCAGTTTATGATATCAATGGCAAGTTAACTGAGCAGAAATCTCATAATGCAACCTTTGGAAGTGGTCATGCTCATCCTAGCATAGAGAATAAGGAGTTTTTTTCAAAAAACTTCGAACCACAGTTCAATGAAGGAGAATTGTATTCTGCAACAAGGTTGAATTCTGAAAATGATATATCTAAAGAAGGTTCCATCAGCTATTCTTTGGCTTTGAAACAATCATTAGTAGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGTTTCTCACGGTGGGTATCTAGAGAGCTTGTGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACTGTAGAATGTGGTGATATGGTGGATGATTCGTCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAACAGACTTTTCTCCGAAGTCGACACTTCTAGATTTAGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGCCACAAAATGTTACTGGTCATGTATGTTTGGGGAAGTTGAGGTTCCTGCAGAGGTTTTGGCTGATGGGATTCTGTGCTGTCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGCGAGGTGCGTGAATTTGATTACCTGGCTGACTCTGCTCAAGATGTAGATGTTACCGATGTATATACCGCTGGTGCTACAGAAGAATTACATATGCATTTGCGGTTTGAGAGGTTACTATCCACTAGATCTTCAGATCCTCCAAATAATCTCTCAGAAGGTGCCTTGGAGAAACGGAACTTGATCAAAAAGCTCATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAAATCAGCATCAAAGCAAGGAATCTCTTTTTATAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATACGTAAAGTAATTGAAGATGGAAAAGGTCCTAATATATTGGATGATAAGGGACAGGGATTAATTCATTTAGCTGCAGCTCTTGGCTATGATTGGGCAATCAGACCAATTGTAGCTACTGGAGTGAGTCTGAATTTTAGAGACGTTAATGGATGGACTGCTCTTCATTGGGCAGCATTCTATGGCAGGGAGTTGACAGTTGGAACTCTTATAACTTTGGGCGCCGATCCTGGATTGCCGTCAGATCCATCTCCAGGCGATCCTTCGGGCACAATGCCTGCAGACCTTGCTTCTGAAAGGGGACAGAAGGGGATCGCTGGTTTTCTAGCGGAGTCGTCATTGACCAGCTACATCTCATCTGTATCAATGGCAGATACCAAAAAAGATGGTGTGCTAGATGCTTCAGAAGGGAAAGCTGTGTATACCGCTGCTGAACGAAAAGCAACACCAATAAATGATGGTCTTATGCCTGGTGATTTGTCCTTGAAGGATTCGTTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGATCGTATACATCTGATGTTTCGAGTAAAGTCATTTCAGAGGAAGCAAATATCAGAGCGTGGACCTGATGAATTTGGATACTCAGATGATAGTGCTATTCCGTTTGTTGCTGCCAGGGCACGCAAGTCTCGACTAAGTAACAGCCCAGACCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAAAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCATTGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATTGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGATCAGATACAGTTGCCAAGACTCCGCCCTCTGTGGTGATGGAACCACGTGAAGAGGATGACGGAGATTTTTTGAAGAAAGGAAGAAGACAGACTGAGGAAAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGGGACCAATACCGTAGGCTACTTACCGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATAAGTGTTACTAGTACTTCAGAAGAGATAATAGAAGGTGATGACATGATTGATATCGACTCACTGCTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA | 3276 | 42.28 | MADRGSYGLAPRLDIDQLLIEARHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPMSSSYSSSRNQAAFENADSPSPTSTVTSSYEDADNEDTYQETSRFHSFPTSPLVNNGLLVNKKEAGPSNLYFPHSSSNNVEAWPLAPAVEYVPQVQKDGLGSSDGGTGVIGSQKTLTSASWEEIFQQCTTGFQTVPSQVLNSWIEPLSSGTVLGQDNSIPGKLLAGNSAIKEDFKSSLTMASNCQVPFEDNTSSFSKGHVDQFPDLYSVYDINGKLTEQKSHNATFGSGHAHPSIENKEFFSKNFEPQFNEGELYSATRLNSENDISKEGSISYSLALKQSLVDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSITDFSPKSTLLDLETEVVIIGKFLGNNHATKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLADSAQDVDVTDVYTAGATEELHMHLRFERLLSTRSSDPPNNLSEGALEKRNLIKKLISIKEEEDCYGEEPNSQNDQNQHQSKESLFIKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGLIHLAAALGYDWAIRPIVATGVSLNFRDVNGWTALHWAAFYGRELTVGTLITLGADPGLPSDPSPGDPSGTMPADLASERGQKGIAGFLAESSLTSYISSVSMADTKKDGVLDASEGKAVYTAAERKATPINDGLMPGDLSLKDSLTAVCNATQAADRIHLMFRVKSFQRKQISERGPDEFGYSDDSAIPFVAARARKSRLSNSPDHAAAVHIQKKFRGWKMRKEFLLIRQRIVKIQAIVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDTVAKTPPSVVMEPREEDDGDFLKKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNISVTSTSEEIIEGDDMIDIDSLLDDDALMSMTFD | 1091 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10856550 | 10871355 | + | CmaCh11G016500.1 | Cma11g01650 | 304159 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01650 | 1091 | ProSiteProfiles | IQ motif profile. | 914 | 943 | IPR000048 | GO:0005515 | |
Cma11g01650 | 1091 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 | 1 | 1091 | - | - | |
Cma11g01650 | 1091 | SUPERFAMILY | E set domains | 505 | 589 | IPR014756 | - | |
Cma11g01650 | 1091 | Pfam | CG-1 domain | 21 | 134 | IPR005559 | GO:0003677 | |
Cma11g01650 | 1091 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 903 | 964 | IPR027417 | - | |
Cma11g01650 | 1091 | SMART | CG_1_2 | 18 | 136 | IPR005559 | GO:0003677 | |
Cma11g01650 | 1091 | Pfam | IQ calmodulin-binding motif | 939 | 958 | IPR000048 | GO:0005515 | |
Cma11g01650 | 1091 | Pfam | IQ calmodulin-binding motif | 915 | 934 | IPR000048 | GO:0005515 | |
Cma11g01650 | 1091 | Gene3D | Immunoglobulins | 498 | 594 | IPR013783 | - | |
Cma11g01650 | 1091 | ProSiteProfiles | IQ motif profile. | 937 | 961 | IPR000048 | GO:0005515 | |
Cma11g01650 | 1091 | CDD | IPT | 504 | 590 | - | - | |
Cma11g01650 | 1091 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 1 | 1091 | - | - | |
Cma11g01650 | 1091 | SMART | iq_5 | 913 | 935 | IPR000048 | GO:0005515 | |
Cma11g01650 | 1091 | SMART | iq_5 | 936 | 958 | IPR000048 | GO:0005515 | |
Cma11g01650 | 1091 | Gene3D | - | 660 | 808 | IPR036770 | - | |
Cma11g01650 | 1091 | Pfam | IPT/TIG domain | 504 | 582 | IPR002909 | - | |
Cma11g01650 | 1091 | ProSiteProfiles | Ankyrin repeat profile. | 738 | 770 | IPR002110 | GO:0005515 | |
Cma11g01650 | 1091 | MobiDBLite | consensus disorder prediction | 147 | 193 | - | - | |
Cma11g01650 | 1091 | MobiDBLite | consensus disorder prediction | 147 | 208 | - | - | |
Cma11g01650 | 1091 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 15 | 141 | IPR005559 | GO:0003677 | |
Cma11g01650 | 1091 | SUPERFAMILY | Ankyrin repeat | 683 | 799 | IPR036770 | - | |
Cma11g01650 | 1091 | Gene3D | - | 914 | 961 | - | - | |
Cma11g01650 | 1091 | MobiDBLite | consensus disorder prediction | 764 | 784 | - | - | |
Cma11g01650 | 1091 | ProSiteProfiles | Ankyrin repeat region circular profile. | 738 | 764 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01650 | Cma-Chr11:10856550 | Cma16g00713 | Cma-Chr16:3713192 | 5.44E-67 | dispersed | |
Cma11g01650 | Cma-Chr11:10856550 | Cma19g00254 | Cma-Chr19:1804145 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35906 | PF03859 | CG-1 | 4.80E-50 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01650 | K21596 | - | csv:101203707 | 1690.24 |