Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01659 ATGGATTTCCTCTCCCGAAAGCTCCTCCCCGACGACGACGACGACGACGACTTCAAGGAACTCTGCCTTAAAACCTGCCCCAATAACTCTCCCGATAATTGCCCTTCCGATTGCCTCGAAAAATGCCCAAATCTTTGTTCCCGTGGCCCGATTTCAATCCCGCCGCCCTATTACGACAAATCGCCTCACAAACTCCCCAATTGGGTCACAGCCACCATCGCCCTTCTCTCTTTCACCTTTCTCCTCGTCCTCTGTTACACCGTCTACGTCCGTTTCTACTCCGGCCGCCGCAGACGCCGCCAACGCCCTGACCCCCCACCGCCCACCACCCACCAGGAGGAGTTTCTCGATGAAGAACATGGCCCTGTTTTGGATCACCCCATCTGGTATATCCGCACCATCGGCCTCCCACCGGCTGTCATCAACGCCATCGCTATCTGCAAATTCAAAACCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTAAGCGAATTTGAAGAGGATGAGACTCTTAGACTTTTGCCCAAGTGTAGCCACGCTTTTCATCTCCCCTGTATCGACACTTGGCTTCAATCCCACACGAACTGCCCCATGTGCCGCGCTCCAGTGGTAGCTCAATCCACTGCCGTGACCCCACCGCCGCCGCCGCCTCCGCCTCCTCTGGTCACATCTGAAGAAACCCAGATGAGGGATTTACAGATGGAAGTGGGAAATGGATCCAATTCCGGCGAATCTTCTCTAAGAAACGAAGAACAACAAGAACAAGATGAAATTCAGGCAGTGAGAAGATCAGTTTCTTTAGATTCATTATCAGCTCTTCGAATCATCTCTGATCTTGCTGAAATTGGTATGAGAAATGGGAATGATTTGAAGAAGAAATCATGCCAAGAGAGAGTGAATTCTTCAGCTGCTATGAACAGGTCAGTTTCTTGCAGTGGCGAATTTGTGATGAGAAATTCGACACAGAGTAGTAGTTGA 987 50.86 MDFLSRKLLPDDDDDDDFKELCLKTCPNNSPDNCPSDCLEKCPNLCSRGPISIPPPYYDKSPHKLPNWVTATIALLSFTFLLVLCYTVYVRFYSGRRRRRQRPDPPPPTTHQEEFLDEEHGPVLDHPIWYIRTIGLPPAVINAIAICKFKTGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLQSHTNCPMCRAPVVAQSTAVTPPPPPPPPPLVTSEETQMRDLQMEVGNGSNSGESSLRNEEQQEQDEIQAVRRSVSLDSLSALRIISDLAEIGMRNGNDLKKKSCQERVNSSAAMNRSVSCSGEFVMRNSTQSSS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10914692 10915678 + CmaCh11G016590.1 Cma11g01659 304168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01659 328 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Cma11g01659 328 MobiDBLite consensus disorder prediction 238 261 - -
Cma11g01659 328 CDD RING-H2_PA-TM-RING 160 203 - -
Cma11g01659 328 MobiDBLite consensus disorder prediction 99 117 - -
Cma11g01659 328 Pfam Ring finger domain 160 203 IPR001841 -
Cma11g01659 328 MobiDBLite consensus disorder prediction 98 117 - -
Cma11g01659 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 212 IPR013083 -
Cma11g01659 328 SMART ring_2 161 202 IPR001841 -
Cma11g01659 328 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 319 IPR044675 -
Cma11g01659 328 SUPERFAMILY RING/U-box 155 209 - -
Cma11g01659 328 PANTHER RING-H2 FINGER PROTEIN ATL54 23 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01659 - - - cmo:103495376 394.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01659 Cma19g00468 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01659 Cma-Chr11:10914692 Cma14g01924 Cma-Chr14:13565063 3.99E-34 dispersed
Cma11g01659 Cma-Chr11:10914692 Cma19g00468 Cma-Chr19:5612484 1.45E-113 wgd
Cma11g01659 Cma-Chr11:10914692 Cma19g00231 Cma-Chr19:1586009 1.27E-46 wgd
Cma11g01659 Cma-Chr11:10914692 Cma03g00822 Cma-Chr3:6253749 9.43E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g981 . . . . . . . . . Cmo11g01477 . . . . Sed10g1872 Cpe04g00372 Cpe15g00366 Bhi05g00901 Tan02g1189 Cmetu01g2487 Lac12g0060 Hepe02g0730 . . . . . . . . . . . . . Lsi03g00730 . . . . . Bda15g00493 . . . . . . . . Cma11g01659 Cma19g00468 Car11g01180 Car19g00344 . . . . . . . . . Cla09g01565 Cam09g1596 Cec09g1718 Cco09g1775 . . Cre09g1612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011597 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01659 Cma_Chr11 FPKM 15.161095 16.651043 6.256404 6.230418 4.671549 5.634886 6.144294 31.104074 30.683865 32.491665