Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01674 ATGCCGGACTCCAATTTCCAAGACGTGATGTACGGTTCCGGAGTCATGAACAACGTTGCCCAGGATTTGGATAACGTTCAGACTCAAGTTGGCGATGAAGACGACAACGTTACCGGCCGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTTGAAGACTCCGGGGGGATGAGCGGCTCGGTCTCAGCGATGAACCGAGTCCAGGATATTGTTCCTTCGGCGTATATTTCCAGCTCTGATTACAACCCTTTGATTGGAAACGGTGGTGCCGATCAGCTTACGCTGTCATTCAGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTACTTTTGCTTTTAGGTGGATATGAAGTTCCTTCTGGTATTCCTGCTGTTGGAAGTATTCCTGTCAATCAACAGGGTGCTGATGGCTTTCCTGTCAGGTCGGCGCAACCGCAAAGAGCTGCTTCATTGAGTAGGTTTCGAGAGAAGAGGAAAGAAAGGTGTTTCGGGAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGGATGCAGCGGAAGAAGGGCCAGTTTATATCGTCTAAAGCTATTCCAGATGAAGAGGGCTCATCTTCAGTTTTGGCTCTAACTTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGCACACATTGTGGAGTCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCAGGCCCGAGGACTCTGTGCAACGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAACCGCTGGCACTCAGGAGCCCTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAACCAACGAGTCCGATGCTGCTATAAACGTGGATGTCCTGGCTTCCAATGGTGGTAAATAG 921 49.62 MPDSNFQDVMYGSGVMNNVAQDLDNVQTQVGDEDDNVTGREESIDNPQMRFEDSGGMSGSVSAMNRVQDIVPSAYISSSDYNPLIGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEVPSGIPAVGSIPVNQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSKAIPDEEGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSTAGTQEPSVKETEQSDGETNESDAAINVDVLASNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11008593 11013573 + CmaCh11G016740.1 Cma11g01674 304183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01674 306 SMART tify_2 86 121 IPR010399 -
Cma11g01674 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 267 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 PANTHER GATA TRANSCRIPTION FACTOR 18 1 297 - -
Cma11g01674 306 MobiDBLite consensus disorder prediction 267 306 - -
Cma11g01674 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cma11g01674 306 Pfam tify domain 90 120 IPR010399 -
Cma11g01674 306 PANTHER GATA TRANSCRIPTION FACTOR 28 1 297 IPR045280 GO:0006355
Cma11g01674 306 MobiDBLite consensus disorder prediction 30 58 - -
Cma11g01674 306 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cma11g01674 306 MobiDBLite consensus disorder prediction 34 48 - -
Cma11g01674 306 CDD ZnF_GATA 224 267 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cma11g01674 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cma11g01674 306 Gene3D - 221 269 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01674 - - - csv:101222542 521.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00850 Cma-Chr8:5167220 Cma11g01674 Cma-Chr11:11008593 9.89E-69 dispersed
Cma11g01674 Cma-Chr11:11008593 Cma17g00633 Cma-Chr17:5374354 8.63E-70 dispersed
Cma11g01674 Cma-Chr11:11008593 Cma19g00483 Cma-Chr19:5772608 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma17g00207 CCT 1 180 Tify Gene Family AT4G14713 52.1 2.7e-45 179.5
Cma08g01125 . 1 180 Tify Gene Family AT4G14713 51.6 3.9e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35907 PF06203 CCT 1.60E-15 CL0281 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01674 Cma_Chr11 FPKM 9.051847 10.419096 9.187912 9.326746 10.615673 11.061064 13.932775 10.395589 11.376288 12.26104