Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01674 ATGCCGGACTCCAATTTCCAAGACGTGATGTACGGTTCCGGAGTCATGAACAACGTTGCCCAGGATTTGGATAACGTTCAGACTCAAGTTGGCGATGAAGACGACAACGTTACCGGCCGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTTGAAGACTCCGGGGGGATGAGCGGCTCGGTCTCAGCGATGAACCGAGTCCAGGATATTGTTCCTTCGGCGTATATTTCCAGCTCTGATTACAACCCTTTGATTGGAAACGGTGGTGCCGATCAGCTTACGCTGTCATTCAGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTACTTTTGCTTTTAGGTGGATATGAAGTTCCTTCTGGTATTCCTGCTGTTGGAAGTATTCCTGTCAATCAACAGGGTGCTGATGGCTTTCCTGTCAGGTCGGCGCAACCGCAAAGAGCTGCTTCATTGAGTAGGTTTCGAGAGAAGAGGAAAGAAAGGTGTTTCGGGAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGGATGCAGCGGAAGAAGGGCCAGTTTATATCGTCTAAAGCTATTCCAGATGAAGAGGGCTCATCTTCAGTTTTGGCTCTAACTTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGCACACATTGTGGAGTCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCAGGCCCGAGGACTCTGTGCAACGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAACCGCTGGCACTCAGGAGCCCTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAACCAACGAGTCCGATGCTGCTATAAACGTGGATGTCCTGGCTTCCAATGGTGGTAAATAG 921 49.62 MPDSNFQDVMYGSGVMNNVAQDLDNVQTQVGDEDDNVTGREESIDNPQMRFEDSGGMSGSVSAMNRVQDIVPSAYISSSDYNPLIGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEVPSGIPAVGSIPVNQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSKAIPDEEGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSTAGTQEPSVKETEQSDGETNESDAAINVDVLASNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11008593 11013573 + CmaCh11G016740.1 Cma11g01674 304183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01674 306 SMART tify_2 86 121 IPR010399 -
Cma11g01674 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 267 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 PANTHER GATA TRANSCRIPTION FACTOR 18 1 297 - -
Cma11g01674 306 MobiDBLite consensus disorder prediction 267 306 - -
Cma11g01674 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cma11g01674 306 Pfam tify domain 90 120 IPR010399 -
Cma11g01674 306 PANTHER GATA TRANSCRIPTION FACTOR 28 1 297 IPR045280 GO:0006355
Cma11g01674 306 MobiDBLite consensus disorder prediction 30 58 - -
Cma11g01674 306 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cma11g01674 306 MobiDBLite consensus disorder prediction 34 48 - -
Cma11g01674 306 CDD ZnF_GATA 224 267 IPR000679 GO:0006355|GO:0043565
Cma11g01674 306 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cma11g01674 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cma11g01674 306 Gene3D - 221 269 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00850 Cma-Chr8:5167220 Cma11g01674 Cma-Chr11:11008593 9.89E-69 dispersed
Cma11g01674 Cma-Chr11:11008593 Cma17g00633 Cma-Chr17:5374354 8.63E-70 dispersed
Cma11g01674 Cma-Chr11:11008593 Cma19g00483 Cma-Chr19:5772608 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35907 PF06203 CCT 1.60E-15 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01674 - - csv:101222542 521.161