Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01674 | ATGCCGGACTCCAATTTCCAAGACGTGATGTACGGTTCCGGAGTCATGAACAACGTTGCCCAGGATTTGGATAACGTTCAGACTCAAGTTGGCGATGAAGACGACAACGTTACCGGCCGGGAAGAGTCCATTGACAACCCTCAGATGCGCTTTGAAGACTCCGGGGGGATGAGCGGCTCGGTCTCAGCGATGAACCGAGTCCAGGATATTGTTCCTTCGGCGTATATTTCCAGCTCTGATTACAACCCTTTGATTGGAAACGGTGGTGCCGATCAGCTTACGCTGTCATTCAGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTACTTTTGCTTTTAGGTGGATATGAAGTTCCTTCTGGTATTCCTGCTGTTGGAAGTATTCCTGTCAATCAACAGGGTGCTGATGGCTTTCCTGTCAGGTCGGCGCAACCGCAAAGAGCTGCTTCATTGAGTAGGTTTCGAGAGAAGAGGAAAGAAAGGTGTTTCGGGAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGGATGCAGCGGAAGAAGGGCCAGTTTATATCGTCTAAAGCTATTCCAGATGAAGAGGGCTCATCTTCAGTTTTGGCTCTAACTTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGCACACATTGTGGAGTCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCAGGCCCGAGGACTCTGTGCAACGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAACCGCTGGCACTCAGGAGCCCTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAACCAACGAGTCCGATGCTGCTATAAACGTGGATGTCCTGGCTTCCAATGGTGGTAAATAG | 921 | 49.62 | MPDSNFQDVMYGSGVMNNVAQDLDNVQTQVGDEDDNVTGREESIDNPQMRFEDSGGMSGSVSAMNRVQDIVPSAYISSSDYNPLIGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEVPSGIPAVGSIPVNQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSKAIPDEEGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSTAGTQEPSVKETEQSDGETNESDAAINVDVLASNGGK | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11008593 | 11013573 | + | CmaCh11G016740.1 | Cma11g01674 | 304183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01674 | 306 | SMART | tify_2 | 86 | 121 | IPR010399 | - | |
Cma11g01674 | 306 | ProSitePatterns | GATA-type zinc finger domain. | 225 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
Cma11g01674 | 306 | ProSiteProfiles | GATA-type zinc finger domain profile. | 224 | 267 | IPR000679 | GO:0006355|GO:0043565 | |
Cma11g01674 | 306 | PANTHER | GATA TRANSCRIPTION FACTOR 18 | 1 | 297 | - | - | |
Cma11g01674 | 306 | MobiDBLite | consensus disorder prediction | 267 | 306 | - | - | |
Cma11g01674 | 306 | Pfam | GATA zinc finger | 225 | 260 | IPR000679 | GO:0006355|GO:0043565 | |
Cma11g01674 | 306 | ProSiteProfiles | Tify domain profile. | 86 | 121 | IPR010399 | - | |
Cma11g01674 | 306 | Pfam | tify domain | 90 | 120 | IPR010399 | - | |
Cma11g01674 | 306 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 1 | 297 | IPR045280 | GO:0006355 | |
Cma11g01674 | 306 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
Cma11g01674 | 306 | SMART | GATA_3 | 219 | 272 | IPR000679 | GO:0006355|GO:0043565 | |
Cma11g01674 | 306 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 222 | 271 | - | - | |
Cma11g01674 | 306 | MobiDBLite | consensus disorder prediction | 34 | 48 | - | - | |
Cma11g01674 | 306 | CDD | ZnF_GATA | 224 | 267 | IPR000679 | GO:0006355|GO:0043565 | |
Cma11g01674 | 306 | Pfam | CCT motif | 153 | 195 | IPR010402 | GO:0005515 | |
Cma11g01674 | 306 | ProSiteProfiles | CCT domain profile. | 153 | 195 | IPR010402 | GO:0005515 | |
Cma11g01674 | 306 | Gene3D | - | 221 | 269 | IPR013088 | GO:0006355|GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00850 | Cma-Chr8:5167220 | Cma11g01674 | Cma-Chr11:11008593 | 9.89E-69 | dispersed | |
Cma11g01674 | Cma-Chr11:11008593 | Cma17g00633 | Cma-Chr17:5374354 | 8.63E-70 | dispersed | |
Cma11g01674 | Cma-Chr11:11008593 | Cma19g00483 | Cma-Chr19:5772608 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35907 | PF06203 | CCT | 1.60E-15 | CL0281 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01674 | - | - | csv:101222542 | 521.161 |