Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01675 ATGTTGCAGTTTTCGATTCGGCGAGTGAGGAAATTGAATGTTCTGAGGCCTCAGATCTTTGCTCTTGGCAATTCTCGATTCTCCACCTCTCCTGAACCGTCTTCCAAGCCTAATCCTCCGAGAGTTCCTAATCTTATAGGAGGGAATTTTGTTGATTCCCGATCCTCAGCATTCATAGATGTCATAAATCCAGCGACCCAAGAAGTTGTTTCTCAAGTTCCATTAACCACAAATGAAGAATTTAAAGCTGCAGTTTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACCCCGGTCACAACTCGCCAAAGAGTTATGCTCAAGCTTCAAGAACTTATCAGGCGAGATATTGACAAACTTGCTCTAAATATTACTACAGAACAAGGAAAAACATTAAAGGATGCGCATGGAGATGTATTCCGGGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCTTCTCTGCAAATGGGGGAATATGTCTCTAATGTTTCACATGGAATTGATACGTACAGCATCAGAGAGCCTCTAGGCGTTTGTGCTGGGATTTGTCCATTCAATTTTCCAGCCATGATTCCCCTATGGATGTTTCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTTGGTTCAAACATTGCGGGCATGCATATATTTTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGCGCAAAAAATCATGCAATTGTCTTGCCTGATGCCAACATAGATACTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAATTGTGGGAGGATAAACTTGTAGAATGTGCCAACGCTCTGAAGGTAAGTTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAGATATAGTGGTTCCTGGATATGAGCATGGAAATTTTATTGGCCCTACTATCTTAACAGACGTGACGCCTGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTTGAGGAGGCCATTAGCATCGTTAACAGAAATAGGTATGGCAATGGAGCTTCCATATTCACCGAATCTGGCATAGCAGCGAGGAAGTTTCAAACTGAAATTGAAGCTGGACAGGTCGGAATCAACGTTCCAATCCCTGTTCCCTTGCCCTTCTTCTCGTTCACCGGCTCCAAGGCATCATTCGCTGGGGATCTCAACTTTTATGAGGGTGGCGTGATTGTATGTCCACCACCGCCGTCCTCCACCGCGGTTGATTCTCTCCGCCGTTCTCCCGCGGAGACCCGCAAAACTCTTCTTCCTCTGAACTTTTCGACCAATTTCAATCTCCTCAAACCGTATCTCTCATCAATTCAACGATTCCAAGAAACCCCGACTCCATCCTTGCCCAATCCACAGTCGTCCATGGCGAACGAACAAGTGCCTCCCTCTCCATCGTCTTCCTCCTCCTCTGCTGCTGCTCCCTTGGGCAACTCCGTCATCCCTATAGTGAACAAGCTCCAGGACATTTTTGCTCAGTTGGGCAGCGAATCCACCATTGAGCTCCCTCAGGTTGCTGTCGTCGGTAGTCAGAGCAGTGGCAAGTCGAGCGTACTGGAAGCCCTCGTCGGTCGTGACTTTCTGCCTAGGGGTTCCGATATCTGTACGCGGCGGCCATTGGTGCTTCAGCTCTTGCAGACCAAGACTGGTGAGGAGTATGGGGAGTTCTTGCACCTACCTGGGAAGAAATTTCACGACTTCTCTGAAATTCGGAGGGAAATTCGTGCTGAGACTGATCGGGAGGCTGGAGGAAATAAAGGCGTCTCAGACAAGCAAATTCGTTTGAAGATCTTTTCACCTACTGTTCTCGATATAACTCTGGTTGATCTTCCTGGTATAACAAAAGTCCCAGTTGGGGATCAACCTTCTGATATTGAAGCTCGCATTAGGACAATGATTATGTCCTACATTAAAGTTCCAAGCTGTTTGATTCTTGCCGTCACACCAGCAAATTCTGATTTAGCTAACTCAGATGCTCTTCAGATTGCTGGAAATGCTGATCCTGATGGTATTAGAACGATTGGGATAATCACAAAGCTAGACATAATGGATAGAGGCACTGATGCACGTAACCTTTTGTATGGAAAAGTGATTCCCTTGCGACTTGGCTACTTTGGTGTTGTGAATCGAAGTCAGGAGGATATTTTACTGAACCGGAGTATCAAAGATGCACTTATAGCTGAGGAGAAATTTTTTCGCAGCCATCCAGTATATGATGGTCTGGCTGATCGTTGTGGTGTTCCTCAATTGGCCAAGAAGCTGAACCAGATTTTAGTGCAACATATCAAGGCAATTCTACCTGGGTTAAAGTCACGCATAAGCTCTGCACTAGTTTCAGCTGCCAAAGAGCATGCCAGTTATGGAGATATAACGGAGTCAAAGGTGTATTTGATTGCTAAAGATTATTTTTATGGTTCAGAGGCTGGTCAAGGTGCTCTACTTCTGAATATTTTATCCAAATATTGTGAAGCATTTGCATCAATGGTTGACGGGAAGAATGGAGAAATGTCAACATCTGAGCTCTCAGGTGGTGCTCGTATTCACTATATTTTCCAGTCAATATTCGTGAAGAGTTTAGAGGAAGTGGATCCATGTGAGAACTTAACTGATGATGACATCCGAACTGCTATCCAGAATGCAACTGGCCCTAAATCTGCTTTATTTGTACCCGAAGTTCCTTTTGAAGTTCTTATTCGCAAGCAAATAGCTCGCTTACTAGATCCAAGCCTCCAGTGTGCAAGGTTGATATATGAGGAACTAGTTAAGATTAGCCATCATTGCGTGGTAAATGAACTACAGAGATTTCCTGTTTTAAGAAAGCGCATGGATGAAGTTATGGGCAATTTTTTGCGAGAAGGTCTTGAACCCTCAGAGACTATGATTGGGCATATCATCGATGTGGAGATGGACTACATAAACACTTCACACCCGAATTTTCTTGGTGGGAGCAAGGCTGTTGAGATTGCATTGCAACAAGTCAAATCTTCTAGGGTTTCCCTGCCTATCTCTAGACAGAAGGCTCGTCCATTGGCAGAAGCTGAAAAAGTTACTTTGTCTGGAGGCACAGGGAGTTCTAATTGGGGGATTTCATCTATTTTTGGTAGTAATAGTAGTGATAACCGTACTTCTGTTAAAGAAAATTCATCAAAAAAACCATTTGGAGAGCCTCTTCATAATGTTGAGCACTCTTTCTCAATGATCCAGTTGAGAGAGCCACCAACTGTTTTGAGGCCCTCAGAAACCCATACGGAGCAGGAGGCTATTGAAATTGCTATAACTAAACTGCTTTTGAGATCCTATTATGATATTGTTAGAAAGAATATTGAGGACTTGGTACCTAAAACCATCATGCACTTCCTGGTAAACCATTCAAAGCGCGTTCTGCACAATGTATTCATTAAAAAACTTTACAGAGAGAACCTGTTTGAAGAGATGTTGCAGGAGCCGGATGAAGTGGCAATGAAGAGAAAGCGTACAAGGGAAACTCTCCGTGTACTTCAACAGGCTTTTCGGACATTGGATGAATTGCCTTTGGAGGCTGAAACAGTTGAAAAGGGATACAACGTTGGTGCCGATCCAACCGGATTACCGAGGATCCATGGACTCCCAACATCATCAATGTATTCTACATTCAGTTCCAGTGATTCATATTCTGCTTCTCCAGGGCACCTGAAATCCCGCAAGTCATCTCATTCAGGGGAGCATTTGTCTCCATTCCATGCTAATGCTGAGTTAAACGGAAGCGGATTCTCGTAA 4089 44.22 MLQFSIRRVRKLNVLRPQIFALGNSRFSTSPEPSSKPNPPRVPNLIGGNFVDSRSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKQAFPAWRNTPVTTRQRVMLKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIFSRGSAKGKRVQSNMGAKNHAIVLPDANIDTTLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVECANALKVSSGTEPDADLGPVISKQAKERIHRLVQSGIDSGARLLLDGRDIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESFEEAISIVNRNRYGNGASIFTESGIAARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYEGGVIVCPPPPSSTAVDSLRRSPAETRKTLLPLNFSTNFNLLKPYLSSIQRFQETPTPSLPNPQSSMANEQVPPSPSSSSSSAAAPLGNSVIPIVNKLQDIFAQLGSESTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGSDICTRRPLVLQLLQTKTGEEYGEFLHLPGKKFHDFSEIRREIRAETDREAGGNKGVSDKQIRLKIFSPTVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKVPSCLILAVTPANSDLANSDALQIAGNADPDGIRTIGIITKLDIMDRGTDARNLLYGKVIPLRLGYFGVVNRSQEDILLNRSIKDALIAEEKFFRSHPVYDGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSAAKEHASYGDITESKVYLIAKDYFYGSEAGQGALLLNILSKYCEAFASMVDGKNGEMSTSELSGGARIHYIFQSIFVKSLEEVDPCENLTDDDIRTAIQNATGPKSALFVPEVPFEVLIRKQIARLLDPSLQCARLIYEELVKISHHCVVNELQRFPVLRKRMDEVMGNFLREGLEPSETMIGHIIDVEMDYINTSHPNFLGGSKAVEIALQQVKSSRVSLPISRQKARPLAEAEKVTLSGGTGSSNWGISSIFGSNSSDNRTSVKENSSKKPFGEPLHNVEHSFSMIQLREPPTVLRPSETHTEQEAIEIAITKLLLRSYYDIVRKNIEDLVPKTIMHFLVNHSKRVLHNVFIKKLYRENLFEEMLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNVGADPTGLPRIHGLPTSSMYSTFSSSDSYSASPGHLKSRKSSHSGEHLSPFHANAELNGSGFS 1362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11016110 11041472 - CmaCh11G016750.1 Cma11g01675 304184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01675 1362 Pfam Dynamin family 616 790 IPR045063 -
Cma11g01675 1362 Pfam Aldehyde dehydrogenase family 50 498 IPR015590 GO:0016491
Cma11g01675 1362 PANTHER DYNAMIN 1119 1317 IPR022812 -
Cma11g01675 1362 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 501 IPR010061 GO:0004491
Cma11g01675 1362 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Cma11g01675 1362 CDD DLP_1 611 878 IPR001401 GO:0003924|GO:0005525
Cma11g01675 1362 ProSiteProfiles GED domain profile. 1201 1292 IPR020850 -
Cma11g01675 1362 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 610 878 IPR030381 GO:0005525
Cma11g01675 1362 CDD ALDH_F6_MMSDH 42 500 IPR010061 GO:0004491
Cma11g01675 1362 PANTHER DYNAMIN 3A-LIKE PROTEIN 582 1118 - -
Cma11g01675 1362 SMART dynamin_3 588 830 IPR001401 GO:0003924|GO:0005525
Cma11g01675 1362 MobiDBLite consensus disorder prediction 1148 1167 - -
Cma11g01675 1362 PRINTS Dynamin signature 710 727 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 760 778 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 779 795 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 802 821 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 613 631 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 638 655 IPR022812 -
Cma11g01675 1362 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 639 648 IPR019762 -
Cma11g01675 1362 Pfam Dynamin central region 799 1098 IPR000375 -
Cma11g01675 1362 Pfam Dynamin GTPase effector domain 1197 1286 IPR003130 GO:0003924|GO:0005525
Cma11g01675 1362 Gene3D - 589 912 IPR027417 -
Cma11g01675 1362 MobiDBLite consensus disorder prediction 1330 1362 - -
Cma11g01675 1362 PANTHER DYNAMIN 3A-LIKE PROTEIN 1119 1317 - -
Cma11g01675 1362 SUPERFAMILY ALDH-like 38 497 IPR016161 GO:0016491
Cma11g01675 1362 MobiDBLite consensus disorder prediction 553 584 - -
Cma11g01675 1362 Gene3D Dynamin, middle domain 921 1267 - -
Cma11g01675 1362 SMART GED_2 1196 1287 IPR003130 GO:0003924|GO:0005525
Cma11g01675 1362 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Cma11g01675 1362 PANTHER DYNAMIN 582 1118 IPR022812 -
Cma11g01675 1362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 590 886 IPR027417 -
Cma11g01675 1362 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01675 K17065 DNM1L; dynamin 1-like protein [EC:3.6.5.5] - csv:101208055 1300.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00850 Cma-Chr3:6357351 Cma11g01675 Cma-Chr11:11016110 0 dispersed
Cma11g01675 Cma-Chr11:11016110 Cma16g00540 Cma-Chr16:2759104 5.46E-91 dispersed
Cma19g00489 Cma-Chr19:5820483 Cma11g01675 Cma-Chr11:11016110 1.68E-26 dispersed
Cma20g00289 Cma-Chr20:1399262 Cma11g01675 Cma-Chr11:11016110 7.55E-60 dispersed
Cma19g00487 Cma-Chr19:5815811 Cma11g01675 Cma-Chr11:11016110 5.44E-08 transposed
Cma11g01675 Cma-Chr11:11016110 Cma19g00485 Cma-Chr19:5782770 0 wgd
Cma11g01675 Cma-Chr11:11016110 Cma03g00849 Cma-Chr3:6355250 5.10E-12 wgd
Cma11g01675 Cma-Chr11:11016110 Cma04g00407 Cma-Chr4:2078446 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00604 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.0 2.9e-212 735.3
Cma11g00601 . 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 69.5 2.3e-209 725.7
Cma12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 4.8e-159 558.5
Cma05g00003 . 34 562 Aldehyde Dehydrogenase Gene Family AT3G24503 51.9 4.5e-157 552.0
Cma11g00104 . 62 546 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 9.4e-155 544.3
Cma11g00104 . 1 546 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 9.1e-257 883.2
Cma12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 4.8e-250 860.9
Cma05g00003 . 1 562 Aldehyde Dehydrogenase Gene Family AT3G48000 72.0 1.3e-242 836.3
Cma10g00604 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.9 1.0e-162 570.9
Cma11g00601 . 17 501 Aldehyde Dehydrogenase Gene Family AT3G48000 53.6 2.0e-158 556.6
Cma12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.6 3.2e-169 592.0
Cma11g00104 . 1 390 Aldehyde Dehydrogenase Gene Family AT1G23800 73.3 1.7e-167 586.3
Cma05g00003 . 1 406 Aldehyde Dehydrogenase Gene Family AT1G23800 71.4 2.4e-164 575.9
Cma10g00604 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 8.0e-104 374.8
Cma11g00601 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 4.4e-102 369.0
Cma09g00785 CST 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 3.4e-179 625.5
Cma01g01383 CST 16 489 Aldehyde Dehydrogenase Gene Family AT4G34240 64.6 4.5e-179 625.2
Cma09g00784 . 3 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.3 3.2e-177 619.0
Cma01g01383 CST 77 487 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 5.1e-178 621.3
Cma09g00784 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 3.1e-175 612.1
Cma09g00785 CST 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 4.9e-173 604.7
Cma02g01246 . 59 475 Aldehyde Dehydrogenase Gene Family AT1G44170 52.0 7.0e-119 424.9
Cma02g01246 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 55.4 8.2e-156 547.7
Cma16g00646 . 5 401 Aldehyde Dehydrogenase Gene Family AT4G36250 60.2 1.8e-147 520.0
Cma20g00289 . 39 571 Aldehyde Dehydrogenase Gene Family AT1G79440 72.4 5.3e-225 777.7
Cma02g00667 . 33 540 Aldehyde Dehydrogenase Gene Family AT1G79440 72.4 7.2e-222 767.3
Cma11g01675 . 12 506 Aldehyde Dehydrogenase Gene Family AT2G14170 83.5 7.0e-242 833.9
Cma03g00850 . 212 612 Aldehyde Dehydrogenase Gene Family AT2G14170 66.1 2.8e-158 556.2
Cma10g00151 . 1 496 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.6e-247 852.4
Cma10g00151 . 1 496 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 2.0e-250 862.1
Cma12g01154 . 1 501 Aldehyde Dehydrogenase Gene Family AT2G24270 89.2 5.3e-267 917.1
Cma05g01236 CCT,CST 1 119 Aldehyde Dehydrogenase Gene Family AT2G24270 73.9 6.7e-44 176.0
Cma13g00931 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.2 6.3e-261 897.1
Cma17g00366 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 3.9e-277 951.0
Cma08g01274 CST 1 560 Aldehyde Dehydrogenase Gene Family AT3G66658 69.4 1.0e-248 856.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001151 1 6 1 4 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 3 3 2 2 8 3 1 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01675 Cma_Chr11 FPKM 36.358944 36.446575 33.104259 34.333969 19.048933 16.837732 17.977777 35.884884 34.913509 35.817066