Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01675 ATGTTGCAGTTTTCGATTCGGCGAGTGAGGAAATTGAATGTTCTGAGGCCTCAGATCTTTGCTCTTGGCAATTCTCGATTCTCCACCTCTCCTGAACCGTCTTCCAAGCCTAATCCTCCGAGAGTTCCTAATCTTATAGGAGGGAATTTTGTTGATTCCCGATCCTCAGCATTCATAGATGTCATAAATCCAGCGACCCAAGAAGTTGTTTCTCAAGTTCCATTAACCACAAATGAAGAATTTAAAGCTGCAGTTTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACCCCGGTCACAACTCGCCAAAGAGTTATGCTCAAGCTTCAAGAACTTATCAGGCGAGATATTGACAAACTTGCTCTAAATATTACTACAGAACAAGGAAAAACATTAAAGGATGCGCATGGAGATGTATTCCGGGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCTTCTCTGCAAATGGGGGAATATGTCTCTAATGTTTCACATGGAATTGATACGTACAGCATCAGAGAGCCTCTAGGCGTTTGTGCTGGGATTTGTCCATTCAATTTTCCAGCCATGATTCCCCTATGGATGTTTCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTTGGTTCAAACATTGCGGGCATGCATATATTTTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGCGCAAAAAATCATGCAATTGTCTTGCCTGATGCCAACATAGATACTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAATTGTGGGAGGATAAACTTGTAGAATGTGCCAACGCTCTGAAGGTAAGTTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAGATATAGTGGTTCCTGGATATGAGCATGGAAATTTTATTGGCCCTACTATCTTAACAGACGTGACGCCTGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTTGAGGAGGCCATTAGCATCGTTAACAGAAATAGGTATGGCAATGGAGCTTCCATATTCACCGAATCTGGCATAGCAGCGAGGAAGTTTCAAACTGAAATTGAAGCTGGACAGGTCGGAATCAACGTTCCAATCCCTGTTCCCTTGCCCTTCTTCTCGTTCACCGGCTCCAAGGCATCATTCGCTGGGGATCTCAACTTTTATGAGGGTGGCGTGATTGTATGTCCACCACCGCCGTCCTCCACCGCGGTTGATTCTCTCCGCCGTTCTCCCGCGGAGACCCGCAAAACTCTTCTTCCTCTGAACTTTTCGACCAATTTCAATCTCCTCAAACCGTATCTCTCATCAATTCAACGATTCCAAGAAACCCCGACTCCATCCTTGCCCAATCCACAGTCGTCCATGGCGAACGAACAAGTGCCTCCCTCTCCATCGTCTTCCTCCTCCTCTGCTGCTGCTCCCTTGGGCAACTCCGTCATCCCTATAGTGAACAAGCTCCAGGACATTTTTGCTCAGTTGGGCAGCGAATCCACCATTGAGCTCCCTCAGGTTGCTGTCGTCGGTAGTCAGAGCAGTGGCAAGTCGAGCGTACTGGAAGCCCTCGTCGGTCGTGACTTTCTGCCTAGGGGTTCCGATATCTGTACGCGGCGGCCATTGGTGCTTCAGCTCTTGCAGACCAAGACTGGTGAGGAGTATGGGGAGTTCTTGCACCTACCTGGGAAGAAATTTCACGACTTCTCTGAAATTCGGAGGGAAATTCGTGCTGAGACTGATCGGGAGGCTGGAGGAAATAAAGGCGTCTCAGACAAGCAAATTCGTTTGAAGATCTTTTCACCTACTGTTCTCGATATAACTCTGGTTGATCTTCCTGGTATAACAAAAGTCCCAGTTGGGGATCAACCTTCTGATATTGAAGCTCGCATTAGGACAATGATTATGTCCTACATTAAAGTTCCAAGCTGTTTGATTCTTGCCGTCACACCAGCAAATTCTGATTTAGCTAACTCAGATGCTCTTCAGATTGCTGGAAATGCTGATCCTGATGGTATTAGAACGATTGGGATAATCACAAAGCTAGACATAATGGATAGAGGCACTGATGCACGTAACCTTTTGTATGGAAAAGTGATTCCCTTGCGACTTGGCTACTTTGGTGTTGTGAATCGAAGTCAGGAGGATATTTTACTGAACCGGAGTATCAAAGATGCACTTATAGCTGAGGAGAAATTTTTTCGCAGCCATCCAGTATATGATGGTCTGGCTGATCGTTGTGGTGTTCCTCAATTGGCCAAGAAGCTGAACCAGATTTTAGTGCAACATATCAAGGCAATTCTACCTGGGTTAAAGTCACGCATAAGCTCTGCACTAGTTTCAGCTGCCAAAGAGCATGCCAGTTATGGAGATATAACGGAGTCAAAGGTGTATTTGATTGCTAAAGATTATTTTTATGGTTCAGAGGCTGGTCAAGGTGCTCTACTTCTGAATATTTTATCCAAATATTGTGAAGCATTTGCATCAATGGTTGACGGGAAGAATGGAGAAATGTCAACATCTGAGCTCTCAGGTGGTGCTCGTATTCACTATATTTTCCAGTCAATATTCGTGAAGAGTTTAGAGGAAGTGGATCCATGTGAGAACTTAACTGATGATGACATCCGAACTGCTATCCAGAATGCAACTGGCCCTAAATCTGCTTTATTTGTACCCGAAGTTCCTTTTGAAGTTCTTATTCGCAAGCAAATAGCTCGCTTACTAGATCCAAGCCTCCAGTGTGCAAGGTTGATATATGAGGAACTAGTTAAGATTAGCCATCATTGCGTGGTAAATGAACTACAGAGATTTCCTGTTTTAAGAAAGCGCATGGATGAAGTTATGGGCAATTTTTTGCGAGAAGGTCTTGAACCCTCAGAGACTATGATTGGGCATATCATCGATGTGGAGATGGACTACATAAACACTTCACACCCGAATTTTCTTGGTGGGAGCAAGGCTGTTGAGATTGCATTGCAACAAGTCAAATCTTCTAGGGTTTCCCTGCCTATCTCTAGACAGAAGGCTCGTCCATTGGCAGAAGCTGAAAAAGTTACTTTGTCTGGAGGCACAGGGAGTTCTAATTGGGGGATTTCATCTATTTTTGGTAGTAATAGTAGTGATAACCGTACTTCTGTTAAAGAAAATTCATCAAAAAAACCATTTGGAGAGCCTCTTCATAATGTTGAGCACTCTTTCTCAATGATCCAGTTGAGAGAGCCACCAACTGTTTTGAGGCCCTCAGAAACCCATACGGAGCAGGAGGCTATTGAAATTGCTATAACTAAACTGCTTTTGAGATCCTATTATGATATTGTTAGAAAGAATATTGAGGACTTGGTACCTAAAACCATCATGCACTTCCTGGTAAACCATTCAAAGCGCGTTCTGCACAATGTATTCATTAAAAAACTTTACAGAGAGAACCTGTTTGAAGAGATGTTGCAGGAGCCGGATGAAGTGGCAATGAAGAGAAAGCGTACAAGGGAAACTCTCCGTGTACTTCAACAGGCTTTTCGGACATTGGATGAATTGCCTTTGGAGGCTGAAACAGTTGAAAAGGGATACAACGTTGGTGCCGATCCAACCGGATTACCGAGGATCCATGGACTCCCAACATCATCAATGTATTCTACATTCAGTTCCAGTGATTCATATTCTGCTTCTCCAGGGCACCTGAAATCCCGCAAGTCATCTCATTCAGGGGAGCATTTGTCTCCATTCCATGCTAATGCTGAGTTAAACGGAAGCGGATTCTCGTAA 4089 44.22 MLQFSIRRVRKLNVLRPQIFALGNSRFSTSPEPSSKPNPPRVPNLIGGNFVDSRSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKQAFPAWRNTPVTTRQRVMLKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIFSRGSAKGKRVQSNMGAKNHAIVLPDANIDTTLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVECANALKVSSGTEPDADLGPVISKQAKERIHRLVQSGIDSGARLLLDGRDIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESFEEAISIVNRNRYGNGASIFTESGIAARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYEGGVIVCPPPPSSTAVDSLRRSPAETRKTLLPLNFSTNFNLLKPYLSSIQRFQETPTPSLPNPQSSMANEQVPPSPSSSSSSAAAPLGNSVIPIVNKLQDIFAQLGSESTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGSDICTRRPLVLQLLQTKTGEEYGEFLHLPGKKFHDFSEIRREIRAETDREAGGNKGVSDKQIRLKIFSPTVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKVPSCLILAVTPANSDLANSDALQIAGNADPDGIRTIGIITKLDIMDRGTDARNLLYGKVIPLRLGYFGVVNRSQEDILLNRSIKDALIAEEKFFRSHPVYDGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSAAKEHASYGDITESKVYLIAKDYFYGSEAGQGALLLNILSKYCEAFASMVDGKNGEMSTSELSGGARIHYIFQSIFVKSLEEVDPCENLTDDDIRTAIQNATGPKSALFVPEVPFEVLIRKQIARLLDPSLQCARLIYEELVKISHHCVVNELQRFPVLRKRMDEVMGNFLREGLEPSETMIGHIIDVEMDYINTSHPNFLGGSKAVEIALQQVKSSRVSLPISRQKARPLAEAEKVTLSGGTGSSNWGISSIFGSNSSDNRTSVKENSSKKPFGEPLHNVEHSFSMIQLREPPTVLRPSETHTEQEAIEIAITKLLLRSYYDIVRKNIEDLVPKTIMHFLVNHSKRVLHNVFIKKLYRENLFEEMLQEPDEVAMKRKRTRETLRVLQQAFRTLDELPLEAETVEKGYNVGADPTGLPRIHGLPTSSMYSTFSSSDSYSASPGHLKSRKSSHSGEHLSPFHANAELNGSGFS 1362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11016110 11041472 - CmaCh11G016750.1 Cma11g01675 304184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01675 1362 Pfam Dynamin family 616 790 IPR045063 -
Cma11g01675 1362 Pfam Aldehyde dehydrogenase family 50 498 IPR015590 GO:0016491
Cma11g01675 1362 PANTHER DYNAMIN 1119 1317 IPR022812 -
Cma11g01675 1362 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 501 IPR010061 GO:0004491
Cma11g01675 1362 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Cma11g01675 1362 CDD DLP_1 611 878 IPR001401 GO:0003924|GO:0005525
Cma11g01675 1362 ProSiteProfiles GED domain profile. 1201 1292 IPR020850 -
Cma11g01675 1362 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 610 878 IPR030381 GO:0005525
Cma11g01675 1362 CDD ALDH_F6_MMSDH 42 500 IPR010061 GO:0004491
Cma11g01675 1362 PANTHER DYNAMIN 3A-LIKE PROTEIN 582 1118 - -
Cma11g01675 1362 SMART dynamin_3 588 830 IPR001401 GO:0003924|GO:0005525
Cma11g01675 1362 MobiDBLite consensus disorder prediction 1148 1167 - -
Cma11g01675 1362 PRINTS Dynamin signature 710 727 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 760 778 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 779 795 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 802 821 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 613 631 IPR022812 -
Cma11g01675 1362 PRINTS Dynamin signature 638 655 IPR022812 -
Cma11g01675 1362 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 639 648 IPR019762 -
Cma11g01675 1362 Pfam Dynamin central region 799 1098 IPR000375 -
Cma11g01675 1362 Pfam Dynamin GTPase effector domain 1197 1286 IPR003130 GO:0003924|GO:0005525
Cma11g01675 1362 Gene3D - 589 912 IPR027417 -
Cma11g01675 1362 MobiDBLite consensus disorder prediction 1330 1362 - -
Cma11g01675 1362 PANTHER DYNAMIN 3A-LIKE PROTEIN 1119 1317 - -
Cma11g01675 1362 SUPERFAMILY ALDH-like 38 497 IPR016161 GO:0016491
Cma11g01675 1362 MobiDBLite consensus disorder prediction 553 584 - -
Cma11g01675 1362 Gene3D Dynamin, middle domain 921 1267 - -
Cma11g01675 1362 SMART GED_2 1196 1287 IPR003130 GO:0003924|GO:0005525
Cma11g01675 1362 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Cma11g01675 1362 PANTHER DYNAMIN 582 1118 IPR022812 -
Cma11g01675 1362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 590 886 IPR027417 -
Cma11g01675 1362 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00850 Cma-Chr3:6357351 Cma11g01675 Cma-Chr11:11016110 0 dispersed
Cma11g01675 Cma-Chr11:11016110 Cma16g00540 Cma-Chr16:2759104 5.46E-91 dispersed
Cma19g00489 Cma-Chr19:5820483 Cma11g01675 Cma-Chr11:11016110 1.68E-26 dispersed
Cma20g00289 Cma-Chr20:1399262 Cma11g01675 Cma-Chr11:11016110 7.55E-60 dispersed
Cma19g00487 Cma-Chr19:5815811 Cma11g01675 Cma-Chr11:11016110 5.44E-08 transposed
Cma11g01675 Cma-Chr11:11016110 Cma19g00485 Cma-Chr19:5782770 0 wgd
Cma11g01675 Cma-Chr11:11016110 Cma03g00849 Cma-Chr3:6355250 5.10E-12 wgd
Cma11g01675 Cma-Chr11:11016110 Cma04g00407 Cma-Chr4:2078446 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01675 K17065 - csv:101208055 1300.42