Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01678 ATGGCGAGAGTTCCGTTCTCGAACCTTAAATCTAAACCTAATACGAAAAAGAGGAAAACTAATGGTGAAATTAACAACCTCCAACAGATGGATGGAGGATTGGGCAACGTAACAACTCAATCACACTCGGATGGTGAGTCTTACATCGATCGTCACCATGGATCTTCGAATTCCGAGTACAATCAATATGTGAGTTTAAATATATCTTCGTGTTCTGGGAGGGATTTGGTTGTTCTTAAGAAACGTTTAATTGCGGAGCTTGAACAAGTTAGGAGATTCAAGAATCGCCTTGAATCTGTCGGCATTGGTTTCGGAACTAATTGTTTCAAGAAATCGTCCAAGACTAAGGAGATTAACAAGCGGCCGAAGCCGCTGCCTAGATTCGGTAGAGATTTGCAGGTTTCCAATTTGTTTGAAGTTAAGAATCTGATGAAGGCTTGCTCTCAAATCTTGAACAAGTTGATGAAGCAGAAGTATGGTTCGATCTTTAACAAGCCTGTGGATGTGGTTGGGCTTCGTCTCCATGATTATTATGATATTGTTAAGCGTCCTATGGATTTAGGGACTGTGAAATCTAAACTAGCTAAGAATTTATATGACTCACCGTTGGATTTTGCTGAAGATATTAGGCTAACCTTTAACAATGCCATGTTGTACAATCCAAAAGGTCATGATGTTCATGTCCTGGCTGAGCAGTGGTCGGTGAAATTTGAGGAATTGTTTCGCACTGTTAGTGAGAAGATGGGCGAGCTGGTGCAGCCAGACCTGTATGAGGAGGAATTGCAAGCCAGTTCTTGGAATCATGTAGAAGAGGCGAAGGTGAAAGCGCCATTGAGCTCATCGAAACCGCCTTCAATACAGTCGCCAGTGAAAACCCCGTCGCCAGTGCGGGCTCCTCAAGTGAAGCCTGTAAGGCAGCCAAAGCCGAAGGATCCGAACAAAAGGGAGATGAGTTTGGAGGAGAAACACAAATTGGGAGTTGGGTTGCAGGGCTTGCCTCCTGAGAAAATGGACCAAGTGATACAGATTGTGAAGAAGAGGAGTGGAAATTTGACACAGGATGGGGACGAGATTGAGCTTGACATCGAGGCAGTTGATACCGAGACCCTTTGGGAACTCGACCAGCTGGTGACAGATTGGAAGAAAATGATGAGCAAAGTCAAGCAGCAATCCCTCATCAGTAACAATGCAAACGCTGATTCCATTAAAGCGAATAATGAGATATCATCTGCAAATGAATTGATTGAGGCTAAAACAGAGGAAAAGAAGCTTAGAAAAGGGGATATGGGTGAGGAAGATGTGGACATTGGGGATGAGGAGATGATGCCAGTGGGTGGTTTCCCTCCTGTTGAAATTGAAAAAGATGCAGCTGCTCATGCTAGCAGTAGTAGGTCTGATAGCTCAAGTAGTTCAGACAGTGATGATTCTTCCTCCTCAAGTGGTTCTGATTCAGAAGGTAGTTCCTCCAATAGCGAATCAGACGGTGACGGCGGCGGTCAATCATAG 1506 44.29 MARVPFSNLKSKPNTKKRKTNGEINNLQQMDGGLGNVTTQSHSDGESYIDRHHGSSNSEYNQYVSLNISSCSGRDLVVLKKRLIAELEQVRRFKNRLESVGIGFGTNCFKKSSKTKEINKRPKPLPRFGRDLQVSNLFEVKNLMKACSQILNKLMKQKYGSIFNKPVDVVGLRLHDYYDIVKRPMDLGTVKSKLAKNLYDSPLDFAEDIRLTFNNAMLYNPKGHDVHVLAEQWSVKFEELFRTVSEKMGELVQPDLYEEELQASSWNHVEEAKVKAPLSSSKPPSIQSPVKTPSPVRAPQVKPVRQPKPKDPNKREMSLEEKHKLGVGLQGLPPEKMDQVIQIVKKRSGNLTQDGDEIELDIEAVDTETLWELDQLVTDWKKMMSKVKQQSLISNNANADSIKANNEISSANELIEAKTEEKKLRKGDMGEEDVDIGDEEMMPVGGFPPVEIEKDAAAHASSSRSDSSSSSDSDDSSSSSGSDSEGSSSNSESDGDGGGQS 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11046967 11048651 - CmaCh11G016780.1 Cma11g01678 304187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01678 501 SMART bromo_6 136 246 IPR001487 GO:0005515
Cma11g01678 501 SUPERFAMILY Bromodomain 138 249 IPR036427 GO:0005515
Cma11g01678 501 Gene3D - 129 252 IPR036427 GO:0005515
Cma11g01678 501 ProSiteProfiles Bromodomain profile. 155 227 IPR001487 GO:0005515
Cma11g01678 501 PANTHER TRANSCRIPTION FACTOR GTE2 53 496 - -
Cma11g01678 501 MobiDBLite consensus disorder prediction 461 501 - -
Cma11g01678 501 MobiDBLite consensus disorder prediction 20 44 - -
Cma11g01678 501 Pfam Bromodomain 147 231 IPR001487 GO:0005515
Cma11g01678 501 MobiDBLite consensus disorder prediction 280 294 - -
Cma11g01678 501 PANTHER OSJNBA0053K19.4 PROTEIN 53 496 - -
Cma11g01678 501 MobiDBLite consensus disorder prediction 419 501 - -
Cma11g01678 501 MobiDBLite consensus disorder prediction 274 319 - -
Cma11g01678 501 ProSiteProfiles NET domain profile. 307 388 IPR027353 -
Cma11g01678 501 Gene3D - 310 387 IPR038336 -
Cma11g01678 501 MobiDBLite consensus disorder prediction 1 54 - -
Cma11g01678 501 PRINTS Bromodomain signature 158 171 IPR001487 GO:0005515
Cma11g01678 501 PRINTS Bromodomain signature 174 190 IPR001487 GO:0005515
Cma11g01678 501 PRINTS Bromodomain signature 190 208 IPR001487 GO:0005515
Cma11g01678 501 PRINTS Bromodomain signature 208 227 IPR001487 GO:0005515
Cma11g01678 501 Pfam Bromodomain extra-terminal - transcription regulation 316 378 IPR027353 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01678 - - - cmos:111434590 871.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00049 Cma-Chr11:217982 Cma11g01678 Cma-Chr11:11046967 2.92E-50 dispersed
Cma11g01678 Cma-Chr11:11046967 Cma11g01922 Cma-Chr11:12679656 1.76E-70 dispersed
Cma11g01678 Cma-Chr11:11046967 Cma16g00286 Cma-Chr16:1345900 6.15E-179 wgd
Cma11g01678 Cma-Chr11:11046967 Cma19g00494 Cma-Chr19:5851215 0 wgd
Cma11g01678 Cma-Chr11:11046967 Cma04g00414 Cma-Chr4:2119849 9.06E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01678 Cma_Chr11 FPKM 5.239708 5.668991 8.093135 5.815073 9.397182 10.136486 9.71541 14.408345 13.148442 12.629606