Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01680 ATGGGATTTTCCATTCTCCCAATTTCCTCCCGAGCTTTACTCTGCAAACCCACACCCTTCGCCTCTCTCCACTCTTCACACCATTCATCGCTCTTCAAAGTTCATTTTGAATCATCTTCTTCTTCGGCGAATCCTAGTTCTTTTGCCATTTATGCAACTTATTTTGGTGGAGTTTTTGGTCCGAGACCTCGCAGTTTCCGTGCGGGCCGTGTTTTAGCTATGTCTTCGCATAATTCCGTCCAGAAATCGGAGGATGAGTGGCGAGCCATTCTCTCGCCGGAGCAGTTTCGAATTCTCCGGCAGAAAGGGACGGAGTATCCTGGAACTGGCAAATATGACAAATTCTATGGCGAGGGAGTTTATCACTGTGCAGGATGTGATGCGCCTCTTTATATGTCGAACACAAAATTCTTTTCCGGTTGTGGCTGGCCAGCTTTCTTCGACGGTATTCCTGGAGCCATTAAACGCACCAGCAACCTGCATATTAAAAGTGTTATGATCTTGTTGAATTTGTCAGCTTTGTTTCCTCCTCTCAGCGATTGGTTTGGTGGCTCAGATTTTTCGTCGCTCTATTGCCGTTGTCCTCTTTCGAATAAGTTTCGGCTTCCATGTCCGATTGCACCAATTGCCATGGCCGCAAGAATGGACACTTCTGGGTTTGTTTTTAAACTAGCAAATGGTTCTCACTGTATTCAAATTGGGTGTATTGGATTCATGAGCTTGGACACTATGTTGGAACCGGTTAGTTGCTGCCAGACCTCGCAGTCTCAGATTTACAGTGTAGTTAAACAGAAGAATTCTTTAAGAGCCTACTCTCATACTGTTCATCAACATTGTGGATCTTCCTTCAACTTACATTATTCACGGTCGAAGAAAGTGGCCATTTCACAAAGCATTATAAATTGCTGGAGGAATGATTATTCCTTTGTCCCTATACAATCCCACAACAATGCTACTACGTTAAACATCAAATTAGTTGGACGAAATGGATACAATTGGTCTAATCATAGGCATAAACCAAGGCAAAGATCAAGAATGCATGCAGCTATTGATGTTGCAGCTGCTGTGGATGTCATCAACGATTTAGGATTGGACACACTGACATTCCTAGCTGTGACCGTCATAGTTGTTCCATTATTTAGGAGGATTAAAGCTAGCCCTATTCTCGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGTGTGATTAGAAATCTTACAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTTGCGCGTCTAAAAGCTCTTGCAAGGTTTGCGTTCGGCATGGGTTTGACACAGGTCATGTTATCGACTATTGCTTTCACAGCGTTTGAACTTCCCCCTAATGGAGCTATTGGAACGAGGATTTTGGAGTTCCTTTTTCACGCCAGATCTGACTTGGTTAACATCAGAAGCGTTGATGAAGCGATTGTGATCGGTGCTGCCCTCTCTCTATCTTCTTCAGCATTCGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCAACAAGATTTGGGTCAGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCTTGGTCATACTTCCTGTTCTTGAGAGCCAGAATTTGGGCACGGAAAGTATCTGGCCAATGCTTGCACAAGAAAGTCTCAAGGCTTTAGGTGGACTCGGTCTGCTGTCCCTTGGAGGAAAGTTGATTCTTAGGCGAGTTTTCGAGGTCGTTGCAGAAGCAAGAAGCTCTGAGGCTTTTGTGGCTCTTTGCCTGCTGACAGTTGCTGGCACATCACTAATCACTCAGAAACTGGGCTTTAGTGACACGCTGGGAGCATTTTTGGCTGGAGCAATATTAGCAGAAACTAATTTCCGGACACAGATTGAAGCTGATATTAGGCCATTTAGGGGCTTGCTCCTCGGGTTATTCTTTGTTACGACCGGGACCTCCATTGATACGCAGGTGCAATATCTTCCGTTTTCCGTGTGCTGCTTCTGTTTCGAGAATGGCCGAATGTCCTTGCCCTTTTGGCTTGGAGTGTTACCACTTGAGTTAAACAAGCTACTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCGTTGCTTAACGAAGCTGGACGGAAGGCGTCTGAATACATCAGTGAAAAGTACAAGACAGACGATAAAGCTGCAGACACGGTGAATTTCGACGCTACCGAACCTGTTATCATCGTTGGATTCGGTCAAATGGGTCAGGTCCTGGCAAATTTCTTATCTACACCTTTGGTATCTGGAGCTGATGGCAGCTCTCCTGGATGGCCATATGTAGCGTTTGATATCGATCTTTCCGTAGTGAAGAGGTCAAGAAAACTTGGTTTTCCCGTTCTCTACGGAGACGGATCACGACCAGCAGTTCTGCAATCTGCTGGAATCTCTTCTCCAAAAGCTGTCATGGTTATGATCACGGAGAAGAAGGCAACAATCGAGGCTGTTCAAAAGCTCCGTCTCGCCTTCCCTGCGATCCCGATTTACGCCCGAGCTAAAGACGTGATGCATCTATTAGATTTAAAGAATGCCGGTGCAACGGATGCTATTCTCGAAGATGCTGAGACTAGTTTACAACTTGGGTCAAAGCTTTTGAAAGGGCTCGGTGTCATGTCCGACCAAGTGTCGTTCCTTAGTCAGATGGTTCGAAACTCTATGGAAGTACGAGCACAAGATGCACTCGACAAATCCAACGAGCAAGAGTTAGAGATTATGAAACCACTGCAGATACGTGTAAAGGACTCGATGATGACCCCGGAGAACGAACTGTCGAGGCTGAACGGCAAAGAAATGGATGAAAGGAAGCAAGCAGATTTAGATGGAAAAGGAGTCCTGTACTGTGAACTTGATACAGTGGAAAACAGTTCAGATCCTGATAATATGGTACAGCCTCCAACCCCTTACATCACAGCCACTGATGCCTTAGAAAACTGA 2994 44.96 MGFSILPISSRALLCKPTPFASLHSSHHSSLFKVHFESSSSSANPSSFAIYATYFGGVFGPRPRSFRAGRVLAMSSHNSVQKSEDEWRAILSPEQFRILRQKGTEYPGTGKYDKFYGEGVYHCAGCDAPLYMSNTKFFSGCGWPAFFDGIPGAIKRTSNLHIKSVMILLNLSALFPPLSDWFGGSDFSSLYCRCPLSNKFRLPCPIAPIAMAARMDTSGFVFKLANGSHCIQIGCIGFMSLDTMLEPVSCCQTSQSQIYSVVKQKNSLRAYSHTVHQHCGSSFNLHYSRSKKVAISQSIINCWRNDYSFVPIQSHNNATTLNIKLVGRNGYNWSNHRHKPRQRSRMHAAIDVAAAVDVINDLGLDTLTFLAVTVIVVPLFRRIKASPILGFFFAGIVLNQFGVIRNLTDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVMLSTIAFTAFELPPNGAIGTRILEFLFHARSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDTQVQYLPFSVCCFCFENGRMSLPFWLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEYISEKYKTDDKAADTVNFDATEPVIIVGFGQMGQVLANFLSTPLVSGADGSSPGWPYVAFDIDLSVVKRSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMITEKKATIEAVQKLRLAFPAIPIYARAKDVMHLLDLKNAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEVRAQDALDKSNEQELEIMKPLQIRVKDSMMTPENELSRLNGKEMDERKQADLDGKGVLYCELDTVENSSDPDNMVQPPTPYITATDALEN 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11055183 11069248 + CmaCh11G016800.1 Cma11g01680 304189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01680 997 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 305 666 - -
Cma11g01680 997 Gene3D - 746 916 - -
Cma11g01680 997 Pfam Sodium/hydrogen exchanger family 369 674 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma11g01680 997 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 689 947 - -
Cma11g01680 997 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 305 666 - -
Cma11g01680 997 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 84 153 IPR002579 GO:0033743
Cma11g01680 997 ProSiteProfiles RCK N-terminal domain profile. 746 878 IPR003148 GO:0006813
Cma11g01680 997 Pfam SelR domain 86 160 IPR002579 GO:0033743
Cma11g01680 997 Gene3D Peptide methionine sulfoxide reductase. 67 172 - -
Cma11g01680 997 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 689 947 - -
Cma11g01680 997 Pfam TrkA-N domain 747 870 IPR003148 GO:0006813
Cma11g01680 997 SUPERFAMILY Mss4-like 80 161 IPR011057 -
Cma11g01680 997 MobiDBLite consensus disorder prediction 973 997 - -
Cma11g01680 997 Gene3D - 361 677 IPR038770 -
Cma11g01680 997 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 746 884 IPR036291 -
Cma11g01680 997 MobiDBLite consensus disorder prediction 973 987 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01680 Cma-Chr11:11055183 Cma14g02022 Cma-Chr14:14121121 1.24E-40 dispersed
Cma06g01094 Cma-Chr6:7379830 Cma11g01680 Cma-Chr11:11055183 3.89E-62 transposed
Cma19g00500 Cma-Chr19:5897011 Cma11g01680 Cma-Chr11:11055183 0 transposed
Cma11g01680 Cma-Chr11:11055183 Cma19g00499 Cma-Chr19:5891708 3.87E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01680 - - csv:101209266 1177.54