Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01680 | ATGGGATTTTCCATTCTCCCAATTTCCTCCCGAGCTTTACTCTGCAAACCCACACCCTTCGCCTCTCTCCACTCTTCACACCATTCATCGCTCTTCAAAGTTCATTTTGAATCATCTTCTTCTTCGGCGAATCCTAGTTCTTTTGCCATTTATGCAACTTATTTTGGTGGAGTTTTTGGTCCGAGACCTCGCAGTTTCCGTGCGGGCCGTGTTTTAGCTATGTCTTCGCATAATTCCGTCCAGAAATCGGAGGATGAGTGGCGAGCCATTCTCTCGCCGGAGCAGTTTCGAATTCTCCGGCAGAAAGGGACGGAGTATCCTGGAACTGGCAAATATGACAAATTCTATGGCGAGGGAGTTTATCACTGTGCAGGATGTGATGCGCCTCTTTATATGTCGAACACAAAATTCTTTTCCGGTTGTGGCTGGCCAGCTTTCTTCGACGGTATTCCTGGAGCCATTAAACGCACCAGCAACCTGCATATTAAAAGTGTTATGATCTTGTTGAATTTGTCAGCTTTGTTTCCTCCTCTCAGCGATTGGTTTGGTGGCTCAGATTTTTCGTCGCTCTATTGCCGTTGTCCTCTTTCGAATAAGTTTCGGCTTCCATGTCCGATTGCACCAATTGCCATGGCCGCAAGAATGGACACTTCTGGGTTTGTTTTTAAACTAGCAAATGGTTCTCACTGTATTCAAATTGGGTGTATTGGATTCATGAGCTTGGACACTATGTTGGAACCGGTTAGTTGCTGCCAGACCTCGCAGTCTCAGATTTACAGTGTAGTTAAACAGAAGAATTCTTTAAGAGCCTACTCTCATACTGTTCATCAACATTGTGGATCTTCCTTCAACTTACATTATTCACGGTCGAAGAAAGTGGCCATTTCACAAAGCATTATAAATTGCTGGAGGAATGATTATTCCTTTGTCCCTATACAATCCCACAACAATGCTACTACGTTAAACATCAAATTAGTTGGACGAAATGGATACAATTGGTCTAATCATAGGCATAAACCAAGGCAAAGATCAAGAATGCATGCAGCTATTGATGTTGCAGCTGCTGTGGATGTCATCAACGATTTAGGATTGGACACACTGACATTCCTAGCTGTGACCGTCATAGTTGTTCCATTATTTAGGAGGATTAAAGCTAGCCCTATTCTCGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGTGTGATTAGAAATCTTACAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTTGCGCGTCTAAAAGCTCTTGCAAGGTTTGCGTTCGGCATGGGTTTGACACAGGTCATGTTATCGACTATTGCTTTCACAGCGTTTGAACTTCCCCCTAATGGAGCTATTGGAACGAGGATTTTGGAGTTCCTTTTTCACGCCAGATCTGACTTGGTTAACATCAGAAGCGTTGATGAAGCGATTGTGATCGGTGCTGCCCTCTCTCTATCTTCTTCAGCATTCGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCAACAAGATTTGGGTCAGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCTTGGTCATACTTCCTGTTCTTGAGAGCCAGAATTTGGGCACGGAAAGTATCTGGCCAATGCTTGCACAAGAAAGTCTCAAGGCTTTAGGTGGACTCGGTCTGCTGTCCCTTGGAGGAAAGTTGATTCTTAGGCGAGTTTTCGAGGTCGTTGCAGAAGCAAGAAGCTCTGAGGCTTTTGTGGCTCTTTGCCTGCTGACAGTTGCTGGCACATCACTAATCACTCAGAAACTGGGCTTTAGTGACACGCTGGGAGCATTTTTGGCTGGAGCAATATTAGCAGAAACTAATTTCCGGACACAGATTGAAGCTGATATTAGGCCATTTAGGGGCTTGCTCCTCGGGTTATTCTTTGTTACGACCGGGACCTCCATTGATACGCAGGTGCAATATCTTCCGTTTTCCGTGTGCTGCTTCTGTTTCGAGAATGGCCGAATGTCCTTGCCCTTTTGGCTTGGAGTGTTACCACTTGAGTTAAACAAGCTACTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCGTTGCTTAACGAAGCTGGACGGAAGGCGTCTGAATACATCAGTGAAAAGTACAAGACAGACGATAAAGCTGCAGACACGGTGAATTTCGACGCTACCGAACCTGTTATCATCGTTGGATTCGGTCAAATGGGTCAGGTCCTGGCAAATTTCTTATCTACACCTTTGGTATCTGGAGCTGATGGCAGCTCTCCTGGATGGCCATATGTAGCGTTTGATATCGATCTTTCCGTAGTGAAGAGGTCAAGAAAACTTGGTTTTCCCGTTCTCTACGGAGACGGATCACGACCAGCAGTTCTGCAATCTGCTGGAATCTCTTCTCCAAAAGCTGTCATGGTTATGATCACGGAGAAGAAGGCAACAATCGAGGCTGTTCAAAAGCTCCGTCTCGCCTTCCCTGCGATCCCGATTTACGCCCGAGCTAAAGACGTGATGCATCTATTAGATTTAAAGAATGCCGGTGCAACGGATGCTATTCTCGAAGATGCTGAGACTAGTTTACAACTTGGGTCAAAGCTTTTGAAAGGGCTCGGTGTCATGTCCGACCAAGTGTCGTTCCTTAGTCAGATGGTTCGAAACTCTATGGAAGTACGAGCACAAGATGCACTCGACAAATCCAACGAGCAAGAGTTAGAGATTATGAAACCACTGCAGATACGTGTAAAGGACTCGATGATGACCCCGGAGAACGAACTGTCGAGGCTGAACGGCAAAGAAATGGATGAAAGGAAGCAAGCAGATTTAGATGGAAAAGGAGTCCTGTACTGTGAACTTGATACAGTGGAAAACAGTTCAGATCCTGATAATATGGTACAGCCTCCAACCCCTTACATCACAGCCACTGATGCCTTAGAAAACTGA | 2994 | 44.96 | MGFSILPISSRALLCKPTPFASLHSSHHSSLFKVHFESSSSSANPSSFAIYATYFGGVFGPRPRSFRAGRVLAMSSHNSVQKSEDEWRAILSPEQFRILRQKGTEYPGTGKYDKFYGEGVYHCAGCDAPLYMSNTKFFSGCGWPAFFDGIPGAIKRTSNLHIKSVMILLNLSALFPPLSDWFGGSDFSSLYCRCPLSNKFRLPCPIAPIAMAARMDTSGFVFKLANGSHCIQIGCIGFMSLDTMLEPVSCCQTSQSQIYSVVKQKNSLRAYSHTVHQHCGSSFNLHYSRSKKVAISQSIINCWRNDYSFVPIQSHNNATTLNIKLVGRNGYNWSNHRHKPRQRSRMHAAIDVAAAVDVINDLGLDTLTFLAVTVIVVPLFRRIKASPILGFFFAGIVLNQFGVIRNLTDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVMLSTIAFTAFELPPNGAIGTRILEFLFHARSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDTQVQYLPFSVCCFCFENGRMSLPFWLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEYISEKYKTDDKAADTVNFDATEPVIIVGFGQMGQVLANFLSTPLVSGADGSSPGWPYVAFDIDLSVVKRSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMITEKKATIEAVQKLRLAFPAIPIYARAKDVMHLLDLKNAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEVRAQDALDKSNEQELEIMKPLQIRVKDSMMTPENELSRLNGKEMDERKQADLDGKGVLYCELDTVENSSDPDNMVQPPTPYITATDALEN | 997 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11055183 | 11069248 | + | CmaCh11G016800.1 | Cma11g01680 | 304189 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01680 | 997 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 305 | 666 | - | - | |
Cma11g01680 | 997 | Gene3D | - | 746 | 916 | - | - | |
Cma11g01680 | 997 | Pfam | Sodium/hydrogen exchanger family | 369 | 674 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Cma11g01680 | 997 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 689 | 947 | - | - | |
Cma11g01680 | 997 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 305 | 666 | - | - | |
Cma11g01680 | 997 | ProSiteProfiles | Methionine-R-sulfoxide reductase (MsrB) domain profile. | 84 | 153 | IPR002579 | GO:0033743 | |
Cma11g01680 | 997 | ProSiteProfiles | RCK N-terminal domain profile. | 746 | 878 | IPR003148 | GO:0006813 | |
Cma11g01680 | 997 | Pfam | SelR domain | 86 | 160 | IPR002579 | GO:0033743 | |
Cma11g01680 | 997 | Gene3D | Peptide methionine sulfoxide reductase. | 67 | 172 | - | - | |
Cma11g01680 | 997 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 689 | 947 | - | - | |
Cma11g01680 | 997 | Pfam | TrkA-N domain | 747 | 870 | IPR003148 | GO:0006813 | |
Cma11g01680 | 997 | SUPERFAMILY | Mss4-like | 80 | 161 | IPR011057 | - | |
Cma11g01680 | 997 | MobiDBLite | consensus disorder prediction | 973 | 997 | - | - | |
Cma11g01680 | 997 | Gene3D | - | 361 | 677 | IPR038770 | - | |
Cma11g01680 | 997 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 746 | 884 | IPR036291 | - | |
Cma11g01680 | 997 | MobiDBLite | consensus disorder prediction | 973 | 987 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01680 | Cma-Chr11:11055183 | Cma14g02022 | Cma-Chr14:14121121 | 1.24E-40 | dispersed | |
Cma06g01094 | Cma-Chr6:7379830 | Cma11g01680 | Cma-Chr11:11055183 | 3.89E-62 | transposed | |
Cma19g00500 | Cma-Chr19:5897011 | Cma11g01680 | Cma-Chr11:11055183 | 0 | transposed | |
Cma11g01680 | Cma-Chr11:11055183 | Cma19g00499 | Cma-Chr19:5891708 | 3.87E-71 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01680 | - | - | csv:101209266 | 1177.54 |