Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01683 ATGGCTGCCGCTAGAGTCTTAGGCAATGCCACCACCACCACCACCGCCGCCGCCGCCGTCACCGCCTCCTGTTTCCTCTCTAAGGCATCACTTTTTCCCAAGCACAGGCTCCCATATGATTCCAATTTCCTTTCCTTCTCCAGAAGACTCCCCTCCTCCAGAAAATCTTTCTCCTGCAGAGCTTTGTACATTCCTGAGGTTAAGATCAAGGAGGAAGGTCTGCCTGAAACCCTCGACTATCGCGTCTTCTTCACTGACCAGTCTGGCAAAAAGGTCTCCCCATGGCATGATATTCCATTGCATTTGGGGGATGGTGTTTTCAACTTCATTGTTGAAATTCCAAAAGAAACCAGTGCAAAAATGGAGGTCGCAACAGATGAGTCGTTCACTCCTATAAAGCAAGATATCAAAAAGGGGAAGCTTCGATACTACCCTTACAATATCAACTGGAATTATGGATTGCTTCCACAAACATGGGAAGATCCATCCTTTGCTAACTCTGAAGTTGAAGGTGCATTTGGAGATAATGATCCTGTTGATGTTGTTGAAATTGGTGAAAGTGATCGTAAGATAGGTGAGATTCTGAAAGTGAAACCAGTGGCTGCTTTAGCCATGATTGATGAAGGGGAACTTGACTGGAAAATAGTTGCAATTTCATTAGACGATCCTAAAGCTTCACTAGTGAATGATATAGACGATGTCGAGAAACATTTCCCGGGAACCTTAACTGCTATAAGGGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAACCCGCTAATAAGTTTGGTCTGGGGAACATGCCTGCAAACAAGGATTATGCCCTTAAAGTTATTGAAGAGACCAACAAATCATGGGCCAATCTCGTGAAGAGATCAATTCCTTCTGGTGAGCTGTCTCTTGTATAG 909 44.55 MAAARVLGNATTTTTAAAAVTASCFLSKASLFPKHRLPYDSNFLSFSRRLPSSRKSFSCRALYIPEVKIKEEGLPETLDYRVFFTDQSGKKVSPWHDIPLHLGDGVFNFIVEIPKETSAKMEVATDESFTPIKQDIKKGKLRYYPYNINWNYGLLPQTWEDPSFANSEVEGAFGDNDPVDVVEIGESDRKIGEILKVKPVAALAMIDEGELDWKIVAISLDDPKASLVNDIDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLGNMPANKDYALKVIEETNKSWANLVKRSIPSGELSLV 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11096559 11100687 - CmaCh11G016830.1 Cma11g01683 304192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01683 302 Gene3D Inorganic pyrophosphatase 66 302 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma11g01683 302 Pfam Inorganic pyrophosphatase 109 286 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma11g01683 302 ProSitePatterns Inorganic pyrophosphatase signature. 175 181 - -
Cma11g01683 302 CDD pyrophosphatase 105 284 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma11g01683 302 SUPERFAMILY Inorganic pyrophosphatase 68 298 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma11g01683 302 PANTHER SOLUBLE INORGANIC PYROPHOSPHATASE 6, CHLOROPLASTIC-LIKE 43 302 - -
Cma11g01683 302 PANTHER INORGANIC PYROPHOSPHATASE 43 302 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Cma11g01683 302 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01683 K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] - csv:101207157 534.643
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01683 Cma19g00509 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01683 Cma-Chr11:11096559 Cma17g00553 Cma-Chr17:4470227 1.16E-16 dispersed
Cma11g01683 Cma-Chr11:11096559 Cma19g00509 Cma-Chr19:5995884 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g830 . Blo03g00046 Bda06g01142 . Bpe07g00302 . Bma05g00627 Bma12g00318 Cmo19g00522 Cmo11g01443 . . . . Sed06g0813 Cpe04g00346 Cpe15g00404 Bhi05g00978 Tan02g1096 Cmetu01g2563 Lac12g0119 Hepe02g0683 . . . . . . . . . . . Cone3ag1063 Cone10ag1078 Lsi03g00651 . . . . . . . . Bpe05g00451 . . . . . Cma11g01683 Cma19g00509 Car11g01159 Car19g00382 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004500 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01683 Cma_Chr11 FPKM 8.346243 7.692409 24.634151 24.732708 76.538193 68.615746 84.639114 13.905906 13.749285 15.156148