Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01684 ATGCATCATAATCATAATTATGAAACTTGGCAGTTGGTCTCTCATTTCCTCGCTCCGTTCTCCTTCCTGTTCCAGCATATGTCCCCATTCAAAACTGCGCAAATCCACCTTGTGAGTTCTCATCGTGAGGTTTATGAACCCTGTGATGATTCATTTGCTTTGGTTGATGCACTTTTAGCTGACCGAGTTAACTTGTTAAATCATCACCCAACATTGTGCTTAGAAGTGGGCTGTGGAAGTGGGTATGTCATAACATCTCTTGCTCTTATGTTGGGAAAGGAAGCCTCTGGCACTCACTATATTGCTACAGACATCAATCCTCACGCAACGAGAGTCACTCAGGAGACTCTAGAAGCACATGGGGTTCATGCGGAGTTGATATCCACTGACATAGCATATGGTTTGGAGAAACGACTGGCTTCATCTGTTGATGTGTTGATTGTGAATCCACCCTATGTTCCAACCCCTGAGGACGAAGTGGGTCTTGAAGGAATTGCATCTGCTTGGGCAGGAGGGGAAAATGGCCGCAGCGTTATCGATAGAATGTTGCCAGTTGCTGATGCTCTTTTGTCTGACAAAGGCTGGTTGTACATGGTTTTTCTTGAAGCAAACAATCCCTCCCAGATATGCCTTCAAATGAGAGAAAAAGGATTCAAGTCACAAAACAGGAACAATTTCAACATCTTAATTAGGAACACTATTATAAGTTCCTTTTGTTTCCTGAATGACTTGAGATTCATCAGGACATCCTCTGTTGTTACAAGGAACAAGCCCATTTTTCAAAATTTGTGCATTCTACAGGTGAACAATAAAGCTTCAAAAAGGCTTCTCCATGTCTCTTCCCTGCCATTATTGAGTTTAGCTGACTGGTTTGAGGAGGTTTGTTTTGGAGAAGAAGAAGCTTTGTGGATGGAGATATCATCTATGATGGGGTTTTCTGAGGTGGGAATGGAGGATAGTGGCTTTGTCAATCAGTGGCACAAGAGCTCTATAGATGAGATTAGCACACTCCCATTAGCAGCAGCTTTTGGGGAGAATTTGCAGCATTCTTATGCTCATACAAACCTTGACCAGAAGGCTTCTTCAAACCATTCTCAAAATGCCATATTTGGGTATGCGAAACATCTCAGTTCATTCCAAACAGCTAATCATTCGCCAAACTCACACGTCGTTGAATATCCGACCACATCTGTTTCGGCTTCGAACTACACGAATCAAATGGACTTCACAAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATCAGCAACATCCCTTCTGATATGTTGAGTTTTCAGGGCTCATTATGTCACCAAAGCCATTTAACCAAGTCAGACCGTGGAGCGAAAAGAACTGCTATCAAAAGTAGACTCCCCCTGGCTCAAGATCACATTCTTGCAGAGCGGAAACGGCGAGAGAAGCTCAGCCAGCGGTTTATCGCCTTGTCTGCTATCGTTCCTGGTCTTAAGAAGATGGACAAGGCTTCTGTTCTTGGAGATGCCATCAAGTACCTGAAACAACTGCAGGAGAAAGTGAAGATACTAGAGGAACAAACTCGAAGGAAAGACATTGAATCCGTGGTATTTGTCAAGAAATCCCGAGTTTTCGGTGATGGAAACAACACATCGAAAATGGAGGATGAGCCACTTCCCGAGATCGAAGCCAGATCATGCGACAAGAACATCCTTATAAGAATACACTGTGTGAAAAACAAAGATGTCATAGAGAAGACCATTGCTGAAATTGAAAAGTTGCACCTAACTATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCTCTCGACATAACTATTATCGCTCAGATGGATAACGAATTCCGTTTGTCGCTAAAGGATCTCGTGAAGAACTTGCAGTCGACTCTCCGAATTTTCCCCCGAAGATTTTCTGTGGGCCGTTTTCCATCCAAATCGATTCATCGCCAGGAAGAGGGAAACCAGAGATTTTCATCTTCGTTTCGTTTCGTTTTGATTTTGTTGTTTTTTTATTGCATTATGGCTCTTCACGGGCTGCGCTGCCTTTTCCTCGGAACTCTTTTTGTTCTTCTTGCTCTTCATGCTTCCGCTGGATCTCCCCCTTCTTCGATTGTAGATGGGTTTACGAAGGATGTGAAGGAGATGATTGGGAAGGGATTAGGGCTTGTGGCTGACGATTTGAAGATCACGGGATTCGATCTCAAAGATGCCAAGGTTGGGCATTCGGTTGCGTACGAGTTCGAGTTGGAGATCGGTAACCAAGTTTTTCCATTGAAGTTTCTGGAAAATGCCCAACATTGGGAATACGTTGATTTGCCCATTTTTCAAATTCAAGAGCAGCCTCGAGCTCAACAAGGGGACGAGAATTTGTTGGTCCAGAAACGTAATACTGCCTCTGATTTGCCTGTCTTGGCTCCCTTTCAGCTCGCTGGACCGATGGAGCTCTGGATTCAGGATGCTGATGGCTTGAGGGTCTCGTTGCCTCATGATGTGGATGCTGGTGTCTTGAAGAAGGTTGTTTTAGCAGATGGAGCAGTTGTCACTGTAACTGGGGCTAGGTCTGTTAGCCTGCGCCATTCGCTCAATCTTCCTCTCCCGCTCAATCGAACACAACCCGGTTTTGCATCGGGGCTTGTAGCTTTGGCTGAACAGCTCCACCACATTTCCCGATCTCAATCTGCCCCCATCCTTTCTCTTCGTATAGTCGGTCCTACCTCCCTCACTTCTTCTCCTAGCTTCAGCAACAAGCTCAAGCTCAAACGCCTTGCCCCTGGTCTAGTGGAACTCTCATCCCCTTCCAAAAAAAACATCCAAGCCATTCAGTCTCCTTCCCCTGTCCAGCTTCAAGCTGGAGCCCCTACCATGCTAACACCAAAGACATTCACAACGCTATGGCCAATTGCCTCCATCAATGGATCGAACTCGAAATTACTTGGCTTTGAAACACTTCTCACGTCCCTTCTCGGCTCCAAGGCAGACAAAAAGGGCTCCTTCAAGCTGCTGAAGGCCGACATTTCCGCCCAAACAACCGTGAAGATTGGGTTTGGTGTCGACAAGAAGTTGAAAGAAGGAGATGGGATCAACTTGGAGGGATTTCCAGAATGGAGGACTAAGCCTGAGGTTGTGAGGATGCATTTCGAGGTCCTGGCGAAGGTCGACGGTGAACGGATCATACCAGAGAGGGTGGTGCCAGTTAATCCAGTCGTTATCGAGGATACGGTGGCTCCTCATTTGCAACTGGGCAATGTGACTGTGTCGAAAACTCCAGTTGTTTACACCCCAGCTGATCCATTCACCATTTAA 3300 45.67 MHHNHNYETWQLVSHFLAPFSFLFQHMSPFKTAQIHLVSSHREVYEPCDDSFALVDALLADRVNLLNHHPTLCLEVGCGSGYVITSLALMLGKEASGTHYIATDINPHATRVTQETLEAHGVHAELISTDIAYGLEKRLASSVDVLIVNPPYVPTPEDEVGLEGIASAWAGGENGRSVIDRMLPVADALLSDKGWLYMVFLEANNPSQICLQMREKGFKSQNRNNFNILIRNTIISSFCFLNDLRFIRTSSVVTRNKPIFQNLCILQVNNKASKRLLHVSSLPLLSLADWFEEVCFGEEEALWMEISSMMGFSEVGMEDSGFVNQWHKSSIDEISTLPLAAAFGENLQHSYAHTNLDQKASSNHSQNAIFGYAKHLSSFQTANHSPNSHVVEYPTTSVSASNYTNQMDFTRPKEEVVCPQSISNIPSDMLSFQGSLCHQSHLTKSDRGAKRTAIKSRLPLAQDHILAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSRVFGDGNNTSKMEDEPLPEIEARSCDKNILIRIHCVKNKDVIEKTIAEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFRLSLKDLVKNLQSTLRIFPRRFSVGRFPSKSIHRQEEGNQRFSSSFRFVLILLFFYCIMALHGLRCLFLGTLFVLLALHASAGSPPSSIVDGFTKDVKEMIGKGLGLVADDLKITGFDLKDAKVGHSVAYEFELEIGNQVFPLKFLENAQHWEYVDLPIFQIQEQPRAQQGDENLLVQKRNTASDLPVLAPFQLAGPMELWIQDADGLRVSLPHDVDAGVLKKVVLADGAVVTVTGARSVSLRHSLNLPLPLNRTQPGFASGLVALAEQLHHISRSQSAPILSLRIVGPTSLTSSPSFSNKLKLKRLAPGLVELSSPSKKNIQAIQSPSPVQLQAGAPTMLTPKTFTTLWPIASINGSNSKLLGFETLLTSLLGSKADKKGSFKLLKADISAQTTVKIGFGVDKKLKEGDGINLEGFPEWRTKPEVVRMHFEVLAKVDGERIIPERVVPVNPVVIEDTVAPHLQLGNVTVSKTPVVYTPADPFTI 1099
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11101687 11115128 + CmaCh11G016840.1 Cma11g01684 304193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01684 1099 CDD bHLH_AtNAI1_like 460 533 - -
Cma11g01684 1099 PANTHER TUNICAMYCIN INDUCED PROTEIN 705 1098 - -
Cma11g01684 1099 PANTHER TUNICAMYCIN INDUCED PROTEIN 705 1098 - -
Cma11g01684 1099 SMART finulus 465 514 IPR011598 GO:0046983
Cma11g01684 1099 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 220 IPR029063 -
Cma11g01684 1099 Pfam Methyltransferase small domain 69 200 IPR007848 GO:0008168
Cma11g01684 1099 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Cma11g01684 1099 Coils Coil 498 525 - -
Cma11g01684 1099 CDD AdoMet_MTases 74 203 - -
Cma11g01684 1099 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Cma11g01684 1099 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 521 IPR036638 GO:0046983
Cma11g01684 1099 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 146 152 IPR002052 GO:0003676|GO:0008168|GO:0032259
Cma11g01684 1099 Gene3D - 461 528 IPR036638 GO:0046983
Cma11g01684 1099 Gene3D Vaccinia Virus protein VP39 42 238 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01684 - - - cmax:111486032 712.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01684 Cma-Chr11:11101687 Cma19g00513 Cma-Chr19:6022892 5.86E-161 dispersed
Cma01g01871 Cma-Chr1:12281511 Cma11g01684 Cma-Chr11:11101687 5.78E-19 transposed
Cma11g01684 Cma-Chr11:11101687 Cma19g00511 Cma-Chr19:6010391 3.25E-123 wgd
Cma11g01684 Cma-Chr11:11101687 Cma03g00867 Cma-Chr3:6435098 2.62E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g825 . . . . . . . . . . . . . . . Cpe04g00343 . . . . . . . . . . . . . . . . . . . Lsi03g00643 . . . . . Bda15g00477 . . . . Bma08g00025 . . . Cma11g01684 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009516 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35908 PF05175 MTS 2.10E-08 CL0063 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01684 Cma_Chr11 FPKM 16.262522 15.750826 10.939909 11.79429 9.001069 9.289797 9.614106 26.196688 25.345543 25.723745