Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01685 ATGATGGAGGAGATTCAAGCTGTGAAGTCTACTACTGACAATCCAGGCGAAGATTTCTACGAGATGATCGAAGCGCCTAAGTTCGTCGACTTCACCGTTTCCGATCACTACATTCCCGATGATCGCTACTGGTTCTGCTCCCGAGTCGGTTGTGAAGAGAAGCATCCAGAAGAAATGGACTCTGAAGTTATTTACAAAAACTTTGTTATGCGGGTAATGGCGGCGAGGAGTCCGAATGTTCGGCTTCAGAGAGCTCGAAGGAATCTGAAGTGCCCACTTACAGCTCCTCCCAAGTCTTCAAAATCTAGAGTGGCCAGACTAGCTCTTATATCTTCCATCTCTAATAGGATAGTGGAGGCAAGAGTGAAATCTAGACCGCCTATTCCCAAGCCTAGTACGACACTGAATGCAAAGGCAAGACAAGTTCATGCCAAGGCCATGACCACTCCAAGAAACAAGAAGCTTAAATCAAATTCCAATGGGTTTCTGAGTGTTAAAAATCCTAAGACTACATCAGCTGAAATGCCGAAGACTACAACGGTAGCTAAGGCTTTGATCTTTCAATCTCCAAAGAAAGATACGAAAAAGAAAAATTCAATAGAAATGAGTACCCCTGTGAAAACTTTATGTGCAGCAATGAAGAAACTTGAGATTACTAGCTCGAAGAAGAACCGATTAGGGGATGGACAGCCGTTGCCTCTGGATCCTCCAAGAAGAAAGTTCAGAGGACGTGAGGTAAAGAGCCGAGTTTTTGATTCATTAGGAACTTACAGTTGCAAACGTCGGGATGCCAAATCTGCAAGAGTTTTGAAGAGGAGAAGCAAAGAAAAGAACTTAAAGCCGCCTCTTCCTGATCACATGGGCCAAGATATTGTTGATGAGGATGCCAGTGACATGGATATTGATGATAAATCAAGGCATGTTTCCATGCAAGGATCTGATCTGCCGAGTTCTGCTACGAGTACTGAAGGAAATCAAGATGAACTTCCAATATCTGAAGATTCGGATAATCTGTCCAAAGACTCTAATGAAACTTTAATTTCAAATTCCGAAAACAATCATGAAGAGATAGCCAAAATAGATGCATTGGAGAGTGGTGATAAAGAAAATGTAGCTGAAATTGATGAAGGTATTCAAGATGAAAAGGTTTTGCAAATTGAGGAGCCCCTGGACGAGAGCACAGATAATGGGTCCAAAAACTTTAAAGATGATGAGACTTCAATATCAAATTCAGAAGCAAGTGATTTCAAATTAGTTCTATGCCAAGTGGAGGATGAGAAGAATCAAAAATCCAATCATGAGGAGAGAACGAAATCAGGGGAAATACAGATAAATATCTCAGAACACGAGATTGATGATAAAGAAAATGCAGTGTCCTCTGATGATGATATAGTGCATGAAAGTGAAACCATCACAGATGAAAATACCGCACCTAAACACAACAGGGTAAACAATTCTTACAACCAGTCTGAAAGAGTGCCATTTGGAAAACTTGAGAAATTTAAAAATACATCAAAGGTCAATGGAGTATTGAAGAAGAAGACTCTAAAGGAGAACACCACCCCTGCTGCACTTGGTTCTCATGGGCTGAAACCCAGCAAACCAAAGTCCACGAATCCGAAGCCATTCAGGCTAAGAACTGATGAAAGAGTTGTACTAAGGGAAGCAAACTTGGGGAAAAAGCTTAATTGCCCGTTGAAAGACATCACTGCATCTCGAAGGTTTCATGGGGACAAGTTACAGAGAAAAACTCAATCCACGGTTCACCAAAATTCTGGATGCGATGATCATGTTGAATATGAACAAGGGGTGTTTCAGAACAAAACCCCAGATGATCAACAAGGAAGAACAGTACCAGATTCCTCAAACAACAACAAAAAAGTAGATTCACAAACTTGCGTTGCTTTAAAACAACAACAGAAACAGAGCCTTTGCCGTCAGCTCAAACCTGCTAAAGAGAGATCAACCAAGCCAGATGATAATCTGAAAAGAAGCAAACTAGAAAAGATACAGCAAAATGTTAGGAAGCCGCCTCGTAGGGAAATGGCTTCTCTAGTAGTACCATCCGGCTTACTCATTGCAAGGAAGGAAAGCAATAGGAACACATTGAGTCACAAAGACGCTAAAGAAACAGACACATTATTATCTCGAAAAACAAGAGCTGCAACTATTCTAAAGGAGCCAAATGTTCGTAGCAGTCATGTACCGAGGAGCTGCTCGCGAAAATTGGGTTAG 2235 41.39 MMEEIQAVKSTTDNPGEDFYEMIEAPKFVDFTVSDHYIPDDRYWFCSRVGCEEKHPEEMDSEVIYKNFVMRVMAARSPNVRLQRARRNLKCPLTAPPKSSKSRVARLALISSISNRIVEARVKSRPPIPKPSTTLNAKARQVHAKAMTTPRNKKLKSNSNGFLSVKNPKTTSAEMPKTTTVAKALIFQSPKKDTKKKNSIEMSTPVKTLCAAMKKLEITSSKKNRLGDGQPLPLDPPRRKFRGREVKSRVFDSLGTYSCKRRDAKSARVLKRRSKEKNLKPPLPDHMGQDIVDEDASDMDIDDKSRHVSMQGSDLPSSATSTEGNQDELPISEDSDNLSKDSNETLISNSENNHEEIAKIDALESGDKENVAEIDEGIQDEKVLQIEEPLDESTDNGSKNFKDDETSISNSEASDFKLVLCQVEDEKNQKSNHEERTKSGEIQINISEHEIDDKENAVSSDDDIVHESETITDENTAPKHNRVNNSYNQSERVPFGKLEKFKNTSKVNGVLKKKTLKENTTPAALGSHGLKPSKPKSTNPKPFRLRTDERVVLREANLGKKLNCPLKDITASRRFHGDKLQRKTQSTVHQNSGCDDHVEYEQGVFQNKTPDDQQGRTVPDSSNNNKKVDSQTCVALKQQQKQSLCRQLKPAKERSTKPDDNLKRSKLEKIQQNVRKPPRREMASLVVPSGLLIARKESNRNTLSHKDAKETDTLLSRKTRAATILKEPNVRSSHVPRSCSRKLG 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11115466 11119346 - CmaCh11G016850.1 Cma11g01685 304194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01685 744 MobiDBLite consensus disorder prediction 151 171 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 354 410 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 426 496 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 607 679 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 262 290 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 220 247 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 276 290 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 144 171 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 305 413 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 310 332 - -
Cma11g01685 744 PANTHER NEUROFILAMENT HEAVY PROTEIN 390 742 - -
Cma11g01685 744 PANTHER NEUROFILAMENT HEAVY PROTEIN 6 376 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 607 646 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 517 544 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 426 476 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 477 492 - -
Cma11g01685 744 MobiDBLite consensus disorder prediction 647 676 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01685 - - - cmax:111485951 1459.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01685 Cma19g00515 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01685 Cma-Chr11:11115466 Cma19g00515 Cma-Chr19:6035838 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g820 . . . . . Bpe12g00727 . . Cmo19g00528 Cmo11g01438 . . . . Sed10g1931 Cpe04g00342 Cpe15g00411 Bhi05g00992 Tan02g1082 Cmetu01g1396 . Hepe02g0673 . . Cla02g00723 Cam02g0771 Cec02g0767 Cco02g0798 Clacu02g0765 Cmu02g0758 Cre02g1073 . . . Cone10ag1074 Lsi03g00640 Csa07g00652 . Cme01g00151 . . Bda15g00474 . . . . Bma08g00023 . . . Cma11g01685 Cma19g00515 Car11g01155 Car19g00390 . . . . . . . . . . . . . . . . . . Chy01g00160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008141 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01685 Cma_Chr11 FPKM 4.166859 4.14081 0.3149 0.267549 12.351166 10.875423 12.009524 0.0 0.0 0.0