Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01688 ATGGGGCTAGTCCTAGTCCCCATCACCCTCGCTCAAAACTCTCACCAAGACTTCGTCAATGCCCACAACGCCGCTCGATCGAGAGTCGGGGTCGGGCCAGTCTCTTGGAACTACACCTTAGCTGCGTATGCCCAAACTTATGCCAACAAGAAGATTGGCACTTGTGAGATGCAACATTCCTATGGCCCTTACGGTGAGAATCTAGCCGAAGGGTATGGCGAGATGACTGCGGTCGAGGCAGTGAACTTTTGGGTGAGCGAGAAGAAATACTACGATCACCGGTTGAACAGATGCGTTGGAGATGAGTGTGGCCATTACACGCAGGTGGTGTGGAGGAACACCAAGCATGTGGGTTGTGCTAGAGTGAAATGCCGCAACAATTGGATTTTTGTTATATGTAACTATGATCCTCCGGGCAATTATGCTGGCCAGCTTCCTTATTGA 444 50.68 MGLVLVPITLAQNSHQDFVNAHNAARSRVGVGPVSWNYTLAAYAQTYANKKIGTCEMQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHRLNRCVGDECGHYTQVVWRNTKHVGCARVKCRNNWIFVICNYDPPGNYAGQLPY 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11143161 11143604 + CmaCh11G016880.1 Cma11g01688 304197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01688 147 Gene3D CAP 12 147 IPR035940 -
Cma11g01688 147 SMART SCP_3 13 143 IPR014044 -
Cma11g01688 147 ProSitePatterns CRISP family signature 2. 130 141 IPR018244 GO:0005576
Cma11g01688 147 Pfam Cysteine-rich secretory protein family 19 135 IPR014044 -
Cma11g01688 147 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 11 147 IPR001283 -
Cma11g01688 147 PRINTS Allergen V5/Tpx-1 family signature 80 93 IPR001283 -
Cma11g01688 147 PRINTS Allergen V5/Tpx-1 family signature 103 119 IPR001283 -
Cma11g01688 147 PRINTS Allergen V5/Tpx-1 family signature 34 52 IPR001283 -
Cma11g01688 147 PRINTS Allergen V5/Tpx-1 family signature 130 143 IPR001283 -
Cma11g01688 147 PANTHER PATHOGENESIS-RELATED PROTEIN 1 11 147 - -
Cma11g01688 147 CDD CAP_PR-1 16 147 - -
Cma11g01688 147 ProSitePatterns CRISP family signature 1. 104 114 IPR018244 GO:0005576
Cma11g01688 147 SUPERFAMILY PR-1-like 5 147 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01688 K13449 PR1; pathogenesis-related protein 1 - csv:101211073 292.737
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01688 Cma-Chr11:11143161 Cma19g00527 Cma-Chr19:6126791 2.06E-81 dispersed
Cma19g00526 Cma-Chr19:6122210 Cma11g01688 Cma-Chr11:11143161 7.40E-56 dispersed
Cma11g01688 Cma-Chr11:11143161 Cma11g01689 Cma-Chr11:11147608 1.23E-55 tandem
Cma11g01688 Cma-Chr11:11143161 Cma19g00519 Cma-Chr19:6087561 1.96E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01688 Cma_Chr11 FPKM 6.59009 6.508446 1.690186 0.589461 0.073668 0.254791 0.0 0.16083 0.136299 0.0