Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01690 ATGCTTCCCTCCACTCTCGCTCAAGACACGCCTCAAGACTTCGTGAACGCCCACAATGCTGCTCGTGCCCTAGTTGGTGTCGGACCTGTGCAATGGGACGCAACCGTGGCAAGCTATGCTCAACAATATGCCAACCTACGCATCAACGATTGTCAGCTAATACACTCTGGTGGCCCTTATGGAGAGAATATTGCATGGGGTAGCTCGAACTTATCCGGCACTGCTGCAGTTCAACTATGGGTGGCCGAGAAACAATATTACAATTATAACACGAATAGTTGTGCAGCTGGGAAGGTGTGTGGCCATTACACCCAAGTGGTGTGGAGAAATTCAGTGAGAATTGGATGTGCTAAAGTGATATGCGCGAATAATGCTGGTACATTCATCACTTGCAACTATGACCCAAGAGGTAATATCATCGGACAAATGCCATATTGA 438 47.72 MLPSTLAQDTPQDFVNAHNAARALVGVGPVQWDATVASYAQQYANLRINDCQLIHSGGPYGENIAWGSSNLSGTAAVQLWVAEKQYYNYNTNSCAAGKVCGHYTQVVWRNSVRIGCAKVICANNAGTFITCNYDPRGNIIGQMPY 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11158319 11158756 + CmaCh11G016900.1 Cma11g01690 304199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01690 145 SMART SCP_3 9 141 IPR014044 -
Cma11g01690 145 CDD CAP_PR-1 11 145 - -
Cma11g01690 145 ProSitePatterns CRISP family signature 2. 128 139 IPR018244 GO:0005576
Cma11g01690 145 Gene3D CAP 9 145 IPR035940 -
Cma11g01690 145 ProSitePatterns CRISP family signature 1. 101 111 IPR018244 GO:0005576
Cma11g01690 145 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 8 145 IPR001283 -
Cma11g01690 145 PRINTS Allergen V5/Tpx-1 family signature 30 48 IPR001283 -
Cma11g01690 145 PRINTS Allergen V5/Tpx-1 family signature 100 116 IPR001283 -
Cma11g01690 145 PRINTS Allergen V5/Tpx-1 family signature 128 141 IPR001283 -
Cma11g01690 145 PRINTS Allergen V5/Tpx-1 family signature 76 89 IPR001283 -
Cma11g01690 145 Pfam Cysteine-rich secretory protein family 15 133 IPR014044 -
Cma11g01690 145 PANTHER PATHOGENESIS-RELATED PROTEIN 1 8 145 - -
Cma11g01690 145 SUPERFAMILY PR-1-like 4 145 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01690 K13449 PR1; pathogenesis-related protein 1 - csv:101212539 250.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01690 Cma19g00532 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00415 Cma-Chr10:1901203 Cma11g01690 Cma-Chr11:11158319 1.07E-47 dispersed
Cma11g00413 Cma-Chr11:2025057 Cma11g01690 Cma-Chr11:11158319 1.22E-39 dispersed
Cma11g01690 Cma-Chr11:11158319 Cma19g00533 Cma-Chr19:6152535 2.99E-86 dispersed
Cma11g01689 Cma-Chr11:11147608 Cma11g01690 Cma-Chr11:11158319 6.81E-49 tandem
Cma11g01690 Cma-Chr11:11158319 Cma19g00532 Cma-Chr19:6148546 4.75E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01690 Cma_Chr11 FPKM 89.990868 88.039742 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0