Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01692 ATGTCCTTACCTGCCGCTCTTTCACCGCCGTCCCTCTATTCCATTCCTTATTCTCAGCCGCCATTACCAACCTCTCGGACCTCGATTCTCTCCCATTCCTTGCAAATTTCTCACACCCTCCTCCGGGCTTCCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATCATTTGGTGGACGATCGGCGCAATTGGAACCGCTCGATTAGCTCCGATTTCGACATAATCGGTGGCGAGGACGACGAGGACGACGAGGATGAGGAAAATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTCCGGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAAGCGAGCCAGGAAGGCTGTGAGATCGGTTCTTCCCCAATCTATCCCTACTAAACTGGTGGGATTTTCTGTCAATGGGGTACTAATGCTAGCGTTTTTGTGGATTTTGAAGGCATTTCTTGAGGTGATATGCACCCTTGGAACTGCAGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTCGATCGACTGGATGATGATCAGCACCATGCCTGGACTGGTGCACAACCTGCTTCCTGA 612 49.02 MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDDRRNWNRSISSDFDIIGGEDDEDDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAVRSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDRLDDDQHHAWTGAQPAS 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11169779 11174802 - CmaCh11G016920.1 Cma11g01692 304201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01692 203 PANTHER ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT 24 203 - -
Cma11g01692 203 PANTHER ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT 24 203 IPR039324 GO:0009787|GO:0010100
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01692 - - - bhj:120069802 310.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01692 Cma19g00540 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01692 Cma-Chr11:11169779 Cma19g00540 Cma-Chr19:6222179 1.70E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g769 . . . . . . . . Cmo19g00554 Cmo11g01428 . . . . . Cpe04g00334 Cpe15g00429 . . . . . . . Cla02g00697 Cam02g0730 Cec02g0745 Cco02g0769 Clacu02g0741 Cmu02g0736 Cre02g1049 . . Cone3ag1046 Cone10ag1062 Lsi03g00599 Csa07g00670 . Cme01g00134 . . . . . . . . . . . Cma11g01692 Cma19g00540 Car11g01151 Car19g00397 . . . . . . . . . . . . . . . . . . Chy01g00145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008881 1 0 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01692 Cma_Chr11 FPKM 8.273299 10.302318 18.437546 17.266922 9.350031 7.695062 9.285475 18.492611 18.697742 19.025089