Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01693 ATGAGAGGGCAGCATTCTCACCCACCGAAGCCGGTTTTCGCCGGACCTGATGACGAAAACGAACCGGGTCGTTCTTATCTCGCCGGAACGAACGCCCCATTAGGCGCTGGGATTCGGAAGAAGGGGACCGGAGTTCGGCCATGGCTGCTTCTGGACTTGACTGGTGGAGCTCAGGTCGTTGAGGCCGGAAAACACGCGATTATGCGGCGGACCGGCCTGCCCGCGCGAGACCTCCGGATTCTCGATCCGATGCTCTCGTATCCATCTACGATTCTTGGCCGTGAGAAAGCGATTGTGATCAATTTGGAGCATATCAAAGCTATTATCACTGCTCAAGATGTGTTCGTGTTGAATGCTAGGGATCCGTCAGTTACCCCCTTTGTCGAGGAGCTTCAGAGGCGGGTTCTACGGCACTACCAAGCCACTAAGGCCGCTCAGGAGGGCAATGGTGATGATTCCAGTTGGAGAAATCTCTATGACTTGGAGGAGCCACGATCCAGGGCTCAAAGTCCCCATAATCCCTATCAAGGATTTCCACAGGCTGAGGAGGAAGAGGGGAAGGAAAACGGTAAACAAGGTCTTGAAAATCGGGAGGGATTGAAGGTTCTACCGTTCGAGTTCGTCGCGTTGGAGGCATGCCTTGAAGCTGCCTGCAGCTGCTTAGAAAGTGAAGCAGATACGTTGGAGCAAGAAGCTCACCCAGCTTTGGATAAGCTGACTTCTAAGATTAGTACTCTCAACTTGGAACGTGTGCGTCAAATCAAAAGTCGATTGGTTGCGATAACTGGGCGAGTTCAAAAGGTGAGGGACGAATTAGAGCACTTGCTAGATGATGATGAGGATATGGCTGAGATGTACTTAACAGAGAAGATGGTTCAGCAACAGCTTGAGACCTCTTCCACTTCTTCAATTCGCGAGAGGGACGAAATGGACGATGATGTTCAGCAATTAGGCAAAGATGACAGGGATGACAGTATTCCTGCTGAAATATCATTGGAAGGTGGTGGAAATTCTGCTAATTATGAAGGCAATATAGATGCTTCACAGGATCATTTATTTGGTGCATCAAATGTGGGCAGGGACAGCCATGGAACCCGAACAAGCACTACCCATAGCGCTGTAAGCAAACTCCTCGATGTCGAGGAGCTAGAGATGCTGTTGGAGGCTTACTTCGTGCAAATTGATGGTACACTCAACAAACTTTCAACGCTGAGGGAGTATGTAGATGACACAGAAGATTACATCAACATAATGCTAGATGACAAGCAGAATCATCTTTTACAAATGGGAGTAATGTTGACAACTGCTACCCTTGTCGTGAGTGCTTTTGTCGTGGTAGCAGGTATCTTCGGGATGAACATCCATATTGAACTATTCGAACCAGAAAAAGCAGGCATGCCGGAGTTCATGTGGACTGTTGGTGGTGGCACTATGGGAACCATCTTCCTGTATGTCATTGCCATTGCCTGGTGCAAGCACAAACGTTTGCTCGAGTAG 1497 49.03 MRGQHSHPPKPVFAGPDDENEPGRSYLAGTNAPLGAGIRKKGTGVRPWLLLDLTGGAQVVEAGKHAIMRRTGLPARDLRILDPMLSYPSTILGREKAIVINLEHIKAIITAQDVFVLNARDPSVTPFVEELQRRVLRHYQATKAAQEGNGDDSSWRNLYDLEEPRSRAQSPHNPYQGFPQAEEEEGKENGKQGLENREGLKVLPFEFVALEACLEAACSCLESEADTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKMVQQQLETSSTSSIRERDEMDDDVQQLGKDDRDDSIPAEISLEGGGNSANYEGNIDASQDHLFGASNVGRDSHGTRTSTTHSAVSKLLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFEPEKAGMPEFMWTVGGGTMGTIFLYVIAIAWCKHKRLLE 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11177026 11180703 + CmaCh11G016930.1 Cma11g01693 304202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01693 498 Pfam CorA-like Mg2+ transporter protein 382 488 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma11g01693 498 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 32 498 IPR039204 -
Cma11g01693 498 MobiDBLite consensus disorder prediction 352 371 - -
Cma11g01693 498 CDD Mrs2_Mfm1p-like 48 496 IPR039204 -
Cma11g01693 498 Gene3D Magnesium transport protein CorA, transmembrane region 157 426 - -
Cma11g01693 498 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 32 498 - -
Cma11g01693 498 MobiDBLite consensus disorder prediction 163 191 - -
Cma11g01693 498 MobiDBLite consensus disorder prediction 1 32 - -
Cma11g01693 498 MobiDBLite consensus disorder prediction 293 328 - -
Cma11g01693 498 Coils Coil 211 231 - -
Cma11g01693 498 Gene3D - 38 119 - -
Cma11g01693 498 MobiDBLite consensus disorder prediction 302 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01693 - - - mcha:111017360 837.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01693 Cma19g00542 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01693 Cma-Chr11:11177026 Cma14g01051 Cma-Chr14:5538346 3.44E-116 dispersed
Cma11g01693 Cma-Chr11:11177026 Cma19g00542 Cma-Chr19:6234736 1.76E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g735 . Blo03g00064 Bda06g01175 . Bpe07g00288 . . Bma12g00295 Cmo19g00556 Cmo11g01427 . . . . . Cpe04g00333 . . . . . . . . Cla02g00695 Cam02g0728 Cec02g0743 Cco02g0767 Clacu02g0739 Cmu02g0734 Cre02g1047 . Cone8ag1071 Cone3ag1040 . . Csa07g00673 . Cme01g00132 . . . . . . . . . . . Cma11g01693 Cma19g00542 Car11g01150 Car19g00399 . . . . . . . . . . . . . . . . . . Chy01g00142 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g01051 . 1 447 MRS2 Gene Family AT1G16010 84.3 1.8e-205 712.6
Cma01g00188 . 1 426 MRS2 Gene Family AT1G16010 83.8 1.1e-191 666.8
Cma19g00058 . 35 370 MRS2 Gene Family AT1G16010 50.5 2.2e-83 307.0
Cma17g00187 CST 1 366 MRS2 Gene Family AT5G64560 79.3 4.4e-157 551.6
Cma08g01112 CST 1 358 MRS2 Gene Family AT5G64560 79.6 3.7e-156 548.5
Cma19g00058 . 1 379 MRS2 Gene Family AT5G64560 68.7 4.2e-131 465.3
Cma11g01693 CST 39 498 MRS2 Gene Family AT3G19640 64.4 6.7e-150 528.1
Cma19g00542 CST 1 217 MRS2 Gene Family AT3G19640 57.1 7.1e-59 225.7
Cma04g00540 . 1 458 MRS2 Gene Family AT3G58970 62.5 2.2e-144 509.6
Cma16g00389 . 59 439 MRS2 Gene Family AT3G58970 68.1 2.7e-134 476.1
Cma14g01051 . 13 447 MRS2 Gene Family AT2G03620 53.7 2.6e-113 406.4
Cma01g00188 . 13 426 MRS2 Gene Family AT2G03620 54.3 5.5e-108 388.7
Cma12g00103 . 138 402 MRS2 Gene Family AT2G03620 60.4 2.4e-87 320.1
Cma04g00540 . 63 457 MRS2 Gene Family AT4G28580 50.3 2.9e-90 329.7
Cma16g00389 . 59 439 MRS2 Gene Family AT4G28580 50.7 1.5e-89 327.4
Cma08g01112 CST 1 320 MRS2 Gene Family AT5G09690 77.8 2.8e-128 455.7
Cma17g00187 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.2e-126 450.3
Cma19g00058 . 1 332 MRS2 Gene Family AT5G09690 66.1 8.5e-109 391.0
Cma01g00188 . 40 384 MRS2 Gene Family AT5G09690 50.1 3.5e-78 289.3
Cma14g01051 . 40 383 MRS2 Gene Family AT5G09690 50.6 4.5e-78 288.9
Cma08g01112 CST 23 280 MRS2 Gene Family AT5G09720 70.5 3.6e-90 328.9
Cma17g00187 CST 23 288 MRS2 Gene Family AT5G09720 66.8 2.9e-87 319.3
Cma19g00058 . 34 292 MRS2 Gene Family AT5G09720 62.0 1.5e-75 280.4
Cma14g01051 . 1 447 MRS2 Gene Family AT1G80900 82.8 3.8e-200 694.9
Cma01g00188 . 1 426 MRS2 Gene Family AT1G80900 83.3 2.0e-188 656.0
Cma12g00807 . 114 453 MRS2 Gene Family AT5G22830 82.1 8.0e-153 537.7
Cma13g00268 . 114 442 MRS2 Gene Family AT5G22830 82.7 1.1e-149 527.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01693 Cma_Chr11 FPKM 28.279488 30.455486 49.56385 47.691326 20.413351 22.24086 18.703453 38.453564 38.22678 37.713596