Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01701 | ATGGAGCAACTCAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTCTCTCAATGGAGTTTTCACAGCTGATGAAGATGCTGCAACATTCATGGCTCAACTTTTCAACTCCACAGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACCCCATAAACTTTTGCTTGGGAGAGCTTGGAAATGATAACAATGGTGGTTTCAATCTTGAAGAGGAGGACTCAAATTTGCAGTCATGTTATGAAGCTGAGTTGATGAAATTACCTGAAGAAGAAGTTGCCATGGAACAAAAGAGGCATACCCAGCTTCAGATCAATTGCAACAAACGATCGAGGGGATCTCGGGATGTAGAGAAGAAGTGGAATGAAAGGTCGAAGAAAACTCAGAAGCTTACCTCAAGCAGCAACACCGAAGAAAATGGCAATGCTGTTCATAGCAAGCAAAGCACAAGCAACTATTGCTCAGAAGACGAATCCAACGCCTCGTTCGAGCTGAATAACTCGAGATCAAATCCGAAAGAGACTACCAAAACCAGAGCTAGTAGAGGCTCAGCTACAGATCCACAGAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGCTATTAAGCTCGGATGATTTATGGATGTACGCTCCGATCGCCTACAACGGAATGGATATCGGGCTTAATCGAACCCCGAACACGTCGAAAGAATTATGA | 828 | 42.87 | MEQLRGPIVEDGDQWSSLNGVFTADEDAATFMAQLFNSTAPDPFMAALDLHNNYCNPINFCLGELGNDNNGGFNLEEEDSNLQSCYEAELMKLPEEEVAMEQKRHTQLQINCNKRSRGSRDVEKKWNERSKKTQKLTSSSNTEENGNAVHSKQSTSNYCSEDESNASFELNNSRSNPKETTKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRTPNTSKEL | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11238101 | 11240026 | - | CmaCh11G017010.1 | Cma11g01701 | 304210 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01701 | 275 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 189 | 255 | IPR036638 | GO:0046983 | |
Cma11g01701 | 275 | SMART | finulus | 195 | 244 | IPR011598 | GO:0046983 | |
Cma11g01701 | 275 | MobiDBLite | consensus disorder prediction | 101 | 201 | - | - | |
Cma11g01701 | 275 | PANTHER | TRANSCRIPTION FACTOR BHLH139-LIKE | 67 | 270 | - | - | |
Cma11g01701 | 275 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 189 | 238 | IPR011598 | GO:0046983 | |
Cma11g01701 | 275 | MobiDBLite | consensus disorder prediction | 116 | 132 | - | - | |
Cma11g01701 | 275 | Pfam | Helix-loop-helix DNA-binding domain | 199 | 239 | IPR011598 | GO:0046983 | |
Cma11g01701 | 275 | Gene3D | - | 191 | 247 | IPR036638 | GO:0046983 | |
Cma11g01701 | 275 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 67 | 270 | - | - | |
Cma11g01701 | 275 | MobiDBLite | consensus disorder prediction | 133 | 193 | - | - | |
Cma11g01701 | 275 | CDD | bHLH_AtIND_like | 190 | 252 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01701 | Cma19g00554 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01701 | Cma-Chr11:11238101 | Cma10g00480 | Cma-Chr10:2188836 | 5.97E-23 | dispersed | |
Cma11g01701 | Cma-Chr11:11238101 | Cma12g00596 | Cma-Chr12:3109902 | 3.54E-49 | wgd | |
Cma11g01701 | Cma-Chr11:11238101 | Cma16g00324 | Cma-Chr16:1521773 | 2.25E-62 | wgd | |
Cma11g01701 | Cma-Chr11:11238101 | Cma19g00554 | Cma-Chr19:6318015 | 1.16E-95 | wgd | |
Cma11g01701 | Cma-Chr11:11238101 | Cma04g00451 | Cma-Chr4:2305604 | 3.64E-52 | wgd | |
Cma11g01701 | Cma-Chr11:11238101 | Cma05g00143 | Cma-Chr5:640612 | 8.94E-53 | wgd | |
Cma11g01701 | Cma-Chr11:11238101 | Cma09g00285 | Cma-Chr9:1167219 | 1.16E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35910 | PF00010 | HLH | 2.10E-09 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01701 | - | - | mcha:111017406 | 310.071 |