Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01701 ATGGAGCAACTCAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTCTCTCAATGGAGTTTTCACAGCTGATGAAGATGCTGCAACATTCATGGCTCAACTTTTCAACTCCACAGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACCCCATAAACTTTTGCTTGGGAGAGCTTGGAAATGATAACAATGGTGGTTTCAATCTTGAAGAGGAGGACTCAAATTTGCAGTCATGTTATGAAGCTGAGTTGATGAAATTACCTGAAGAAGAAGTTGCCATGGAACAAAAGAGGCATACCCAGCTTCAGATCAATTGCAACAAACGATCGAGGGGATCTCGGGATGTAGAGAAGAAGTGGAATGAAAGGTCGAAGAAAACTCAGAAGCTTACCTCAAGCAGCAACACCGAAGAAAATGGCAATGCTGTTCATAGCAAGCAAAGCACAAGCAACTATTGCTCAGAAGACGAATCCAACGCCTCGTTCGAGCTGAATAACTCGAGATCAAATCCGAAAGAGACTACCAAAACCAGAGCTAGTAGAGGCTCAGCTACAGATCCACAGAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGCTATTAAGCTCGGATGATTTATGGATGTACGCTCCGATCGCCTACAACGGAATGGATATCGGGCTTAATCGAACCCCGAACACGTCGAAAGAATTATGA 828 42.87 MEQLRGPIVEDGDQWSSLNGVFTADEDAATFMAQLFNSTAPDPFMAALDLHNNYCNPINFCLGELGNDNNGGFNLEEEDSNLQSCYEAELMKLPEEEVAMEQKRHTQLQINCNKRSRGSRDVEKKWNERSKKTQKLTSSSNTEENGNAVHSKQSTSNYCSEDESNASFELNNSRSNPKETTKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRTPNTSKEL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11238101 11240026 - CmaCh11G017010.1 Cma11g01701 304210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01701 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 255 IPR036638 GO:0046983
Cma11g01701 275 SMART finulus 195 244 IPR011598 GO:0046983
Cma11g01701 275 MobiDBLite consensus disorder prediction 101 201 - -
Cma11g01701 275 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 67 270 - -
Cma11g01701 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Cma11g01701 275 MobiDBLite consensus disorder prediction 116 132 - -
Cma11g01701 275 Pfam Helix-loop-helix DNA-binding domain 199 239 IPR011598 GO:0046983
Cma11g01701 275 Gene3D - 191 247 IPR036638 GO:0046983
Cma11g01701 275 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 270 - -
Cma11g01701 275 MobiDBLite consensus disorder prediction 133 193 - -
Cma11g01701 275 CDD bHLH_AtIND_like 190 252 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01701 Cma19g00554 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01701 Cma-Chr11:11238101 Cma10g00480 Cma-Chr10:2188836 5.97E-23 dispersed
Cma11g01701 Cma-Chr11:11238101 Cma12g00596 Cma-Chr12:3109902 3.54E-49 wgd
Cma11g01701 Cma-Chr11:11238101 Cma16g00324 Cma-Chr16:1521773 2.25E-62 wgd
Cma11g01701 Cma-Chr11:11238101 Cma19g00554 Cma-Chr19:6318015 1.16E-95 wgd
Cma11g01701 Cma-Chr11:11238101 Cma04g00451 Cma-Chr4:2305604 3.64E-52 wgd
Cma11g01701 Cma-Chr11:11238101 Cma05g00143 Cma-Chr5:640612 8.94E-53 wgd
Cma11g01701 Cma-Chr11:11238101 Cma09g00285 Cma-Chr9:1167219 1.16E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35910 PF00010 HLH 2.10E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01701 - - mcha:111017406 310.071