Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01702 ATGGCGACATCTTCACCTCTTCATATCTCTGCTACTCCGTCGTTGGCCGTCGGAAGCTCAAAGTCATCATTTCTTTTCGGTACCCATCTCCCTTTCCCTTCCTCTCGCCCAAGAACTTCATATCGCAGATACTTTCTTTCTCCCTCTGCCAAAAAATCGATGGACCACATTCCTAAGCAATTCAGAGAAGAGAATCTCAAAGATGGCTTGATGGAGAACTACAAGAACGCTCCTCAATCACTTTATGGCCTTACACCTTCACAACTGGACATGTTCATGACAGAAGATAATCCTGTCAGGCGACAGTCAGAATTAGTTACTGAGGAAAGCATCTCATCCGCCCACAGCTATTTGACTAATGGTGGAATGTGGAGTCTATCAGGCATGGATGGAAAAAAGGGTCCATCAAAATATAGTATGAGCGCTAGTATGTATCGTGGGGGAGGAAGGGGATATGGGCGACGCCAATCAGCTCCTCCTGATTTGCCTTCTTTGCTCTTGGACGCTCGTATAGTCTACTTGGGCATGCCTATCGTACCAGCAGTGACTGAGCTTCTTGTTGCTCAGTTTATGTGGCTAGACTATGATAACCCATCAAAGCCTATATATCTCTACATAAACTCTCCGGGGACGCAGAATGAGAAGATGGAGAATGTTGGATTCGAAACTGAAGCATATGCTATAGCAGATATGATGGCTTATTGCAAACCTGATGTCTATACTATAAACTGCGGAATGGCATTCGGTCAAGCGGCAATGCTTTTGTCACTTGGAACCAAGGGTTACCGTGCTGCCCAGCCTAACTCCTCCACTAAACTGTATCTGCCTAAAGTTAGTAGATCAAGTGGTGCGGTCATAGATATGTGGATTAAGGCCAGAGAACTTGATGCCAACACCGATTACTATATCGAGCTATTAGCTAAAGGAACTGGTAAACCCGTGGAAGAGATTGCTAAAGATGTTCAACGACCCAAGTACTTCAATCCCCAAGAAGCCATTGACTATGGCCTTGTAGACAAGATAATCAGCTCACGGGATTCTGCGTTCGAAAAGAGGAACTACGACGATATGCTTGCGCAGTCGAGAGCCATGAGGAAAGGAGCCGGAGGCAATCCACAAGCCGCGCCATCCGGGTTGAGAGCTTTGGAGATCTATATCCATGTCGTTGAATTGTTAGTTTTGCCATACCGGTCCAACTTTGTTTCATCTCAGCGTCTCCGCGCCGGTCACTGCAATGGTGGTCTGCAAATGCCGCAAGAATTACGGAATTATAAGCTCATTGCTACGCGGGCCACGAAGTTGTATTGTTTTGTTCATAAGGTTCCCGTATGTGGAGAATGCATATGTTTCCCAGAACACCAAATATGCGTGATTCGCACCTATTCAGAGTGGGTATTGAATGGAGATTATGATTGGCCTCCAAATTGCTGCCTGTGTCATGCTACACTTGAGGAAGGAACTGGTCCCCAAACTACTCGATTGGGATGCTTGCATGTTATACATACGGATTGCTTGGTCTCACATATCAAGAGCTTTCCTCCATCCACTGCCCCTGCTGGCTACGACTGTCCCGCCTGTTCCATTTCGATATGGCCTCCGAAGAACATTAAAGATTCAGGATCTCGTCTACATGCAAAGCTAAAGGAAGCTATCTTGCAGACTGGTCTGGAAAAGAGTTTGTTTGGAAATCATCCAGTAGGATTATCAGCAACAGAATCCCATGGGCCTCCCCCTGCCTTTGCCTCAGATCCCTTGGTTTCCTCTTCAGGAGATGCACATAACAATAAGAGCTCATTAAATTCAATAGCAAACGTTGTCTCAAATACGGGTGAAGGATTCTCAGCCACAACTGGAGCTGGATCTTCCAAAAATAACATTTCAGATATTGTTGAGATTGAAATTCCTGGTCCAGAAGGGAATTTTGTGAAAGGCTCAAGTCCTTCAGCCCCTGTTGCTACCACAAGAAAGGGTGCAATCAATTATGACAGGCAAAGTTCTGAAATTTCGTATTATGCTGATGATGAAGATGGTAACAGTAAGAAATACGTTCGAAGAGGTCCTTTTAGGCACAAGTTTCTTAGAGCGCTACTTCCTTTCTGGTCGACAGCATTGCCAACCTTACCCGTGACTGCGCCTCCACGTAAAGATTCATTGGGTGCCAATGATGTCAGTGAAGGCCGTGTTCGGCACCAAAGACCCTCCAGAATGGATCCCAGAAAAATTCTTCTTGTCATAGCAATCATGGCATGTCTGGCAACCATGGGTATTTTGTACTACAGACTTGCACAAAGAGGTATAGGAGAAGAAGTTGTGGATGACGAGCAGCAACTGAAAGCAGCACAATGA 2346 45.61 MATSSPLHISATPSLAVGSSKSSFLFGTHLPFPSSRPRTSYRRYFLSPSAKKSMDHIPKQFREENLKDGLMENYKNAPQSLYGLTPSQLDMFMTEDNPVRRQSELVTEESISSAHSYLTNGGMWSLSGMDGKKGPSKYSMSASMYRGGGRGYGRRQSAPPDLPSLLLDARIVYLGMPIVPAVTELLVAQFMWLDYDNPSKPIYLYINSPGTQNEKMENVGFETEAYAIADMMAYCKPDVYTINCGMAFGQAAMLLSLGTKGYRAAQPNSSTKLYLPKVSRSSGAVIDMWIKARELDANTDYYIELLAKGTGKPVEEIAKDVQRPKYFNPQEAIDYGLVDKIISSRDSAFEKRNYDDMLAQSRAMRKGAGGNPQAAPSGLRALEIYIHVVELLVLPYRSNFVSSQRLRAGHCNGGLQMPQELRNYKLIATRATKLYCFVHKVPVCGECICFPEHQICVIRTYSEWVLNGDYDWPPNCCLCHATLEEGTGPQTTRLGCLHVIHTDCLVSHIKSFPPSTAPAGYDCPACSISIWPPKNIKDSGSRLHAKLKEAILQTGLEKSLFGNHPVGLSATESHGPPPAFASDPLVSSSGDAHNNKSSLNSIANVVSNTGEGFSATTGAGSSKNNISDIVEIEIPGPEGNFVKGSSPSAPVATTRKGAINYDRQSSEISYYADDEDGNSKKYVRRGPFRHKFLRALLPFWSTALPTLPVTAPPRKDSLGANDVSEGRVRHQRPSRMDPRKILLVIAIMACLATMGILYYRLAQRGIGEEVVDDEQQLKAAQ 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11248774 11265146 - CmaCh11G017020.1 Cma11g01702 304211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01702 781 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 46 369 - -
Cma11g01702 781 CDD Bbox2 433 454 - -
Cma11g01702 781 MobiDBLite consensus disorder prediction 567 594 - -
Cma11g01702 781 SUPERFAMILY ClpP/crotonase 155 346 IPR029045 -
Cma11g01702 781 MobiDBLite consensus disorder prediction 711 732 - -
Cma11g01702 781 Gene3D - 150 349 - -
Cma11g01702 781 PRINTS Clp protease catalytic subunit P signature 320 339 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma11g01702 781 PRINTS Clp protease catalytic subunit P signature 161 176 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma11g01702 781 PRINTS Clp protease catalytic subunit P signature 241 258 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma11g01702 781 PRINTS Clp protease catalytic subunit P signature 262 281 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma11g01702 781 PRINTS Clp protease catalytic subunit P signature 201 221 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma11g01702 781 ProSiteProfiles Zinc finger RING-type profile. 476 527 IPR001841 -
Cma11g01702 781 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 46 369 IPR023562 -
Cma11g01702 781 Pfam Clp protease 162 344 IPR023562 -
Cma11g01702 781 CDD S14_ClpP_2 161 341 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma11g01702 781 SUPERFAMILY RING/U-box 459 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01702 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101215656 655.595
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00813 Cma-Chr6:4336092 Cma11g01702 Cma-Chr11:11248774 7.23E-52 dispersed
Cma11g01702 Cma-Chr11:11248774 Cma06g00600 Cma-Chr6:2891334 3.07E-29 dispersed
Cma11g01702 Cma-Chr11:11248774 Cma19g00556 Cma-Chr19:6335453 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g695 Blo02g00932 . . Bda08g00678 . . Bma05g00652 . . Cmo11g01416 . . . . . Cpe04g00324 . . . . . . . . . . . . . . . . . . . . Csa07g00689 . Cme01g00116 . . . . . Bpe05g00474 . . . . . Cma11g01702 . Car11g01140 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011358 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01702 Cma_Chr11 FPKM 33.762638 33.025826 87.89093 84.916595 97.77562 100.29541 101.979881 86.850113 87.17128 86.441063