Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01704 ATGGTGGCTGCCATTTCTGGAGCAGCTTCGGCCCACTCTCCAACTCCCAAAATCTCTACCAATCAACGTCATGAACACCAGCAAGATCATCTTAGAAATCAAGCCAGGCCTCCATTGTTGCCTTCTGAGAAGGACAATGGAGTTCTTAATCGGAAACCCAGAGGTAGACAGGTTCCTTCAAGGTATATGTCTCCTTCGCCTTCCACTTCTACTTCTACTTCCTCGACTACTTCGTCTTCGGCTTCTTCTCGCCGATTTCCGTCTCCATTGCTATCTCGGTCCACTAATTTGACCCCTGCGTCTACTCCATTGCCTTCCTTGGGACCTAAGCGGTCCCAATCGGTGGACCGGAGGCGACCAACGGCGCCCCGGTCGATGACTCCGGTTATTGAATCGAGGCACGGTAATGCGACTGAGGCTGCGAAGCTTTTGGTTACTTCTACGAGGAGTTTATCGGTTTCTTTTCAAGGAGAGGCGTTTTCGCTTCCGATTAGTAAGACGAAGGCTACTTCGACGCCGAGTTTGAGTAATGCGAGGAAGGGTTCGACGCCGGAACGGCGTCGGGCGACTCCACTTAGGGATAAGAGCGATGGGTCTGGAGTTCAGGTGGAGAATTCGAAATTACTTGATCAACATCGCTGGCCGGCGAGGAACCGGCATGCTAATTTGGAGGGGAATCCGTTGTCGAGGAGTTTGGATTGCAGTGGTGAGCAGAAGAAAGTGAATGGAATTGGATCTGGGATGGTGGTTCGGGGGTTACAGCAAACAATGCTAGATGACAGTAGAAGAGCTTCTTTTGATGGCAGATTGAGCTTGGATTTAAGCAGTCCCGAGTTGTTGAAGACCGTTCGGCAAAGCCCAGATGCCGATTCTGTCAACGAGTCTTCTGTGCCCTCTGATCTCACTACATCTGATACGGACAGTGTTTCCTCCGGCAGTACTTCAGGCGTTCAAGATTGTGGTACGGTTGCCAAGGGAAGAAATGGGCCTCGAGGGATTGTTGTATCTGCGAGGTTTTGGCAAGAGACCAACAGCAGGCTGCGGCGCTTGCATGATCCTGGTTCTCCTTTATCGACTAGTCCTGGGGCGAGATTGGGAGCCCCATCAAAGTTTAATCAGTCAAAACGGTTCTCAAGTGATGGGCCAATTTTATCACCACGAACAATGGCTTCCCCTATTCGCGGTGGCGCCAGGCCTCCATCCCCAAGTAAGCTTTGGACTTCTTCCGTGTCATCACCATCAAGGGGGATTTCTAGTCCTTCCAGAACGAGAAATGGTGTCGGTGGATCCTTGGTTAGTAACTCTATTAGTACGCCCTCCATTCTCAGTTTCTCTGTTGATATCCGGAGGGGGAAGATGGGGGAAGATCGCATTGTTGATGCACATGTATTGAGGCTTCAGCATAACCGTTACTTGCAATGGCGGTTTGTGAACGCAAGGGCAGATGCTACGTTCATGCTGCAGAGACTAAACGCAGAGAGGAATGTTTGGAATGCATGGGTCACTATCTCAGAACTACGGCATACTGTCACACTTAAAAGAATCAAGTTACTATTACTACGGCAAAAATTGAAGCTGACATCCGTCCTCAAGGGACAAATAAGTTATTTGGAAGAGTGGGCTCTTTTAGACAGAGATCACTCGAGCTCCATGCTTGGAGCGACCGAGGCTTTGAAGGCTAGTACTCTACGGCTCCCAGTTGTTGGGAAATCAATAGCGGATATTCAGAACCTGAAGGATGCTGTTGGATCAGCTGTTGATGTTATGCAAGCAATGGCATCCTCAATTTGCTCTCTATCATCTAAGGTAGAAGAAACGAACTCCGTGGTGGCTGAACTGGTTAAGGTGACGGCGAAGGAACGGATTTTACTTCAACAATGTGAAGATTTTTTATCTACGCTAGCAGCCATGCAGGTGAAAGATTGTAGCCTGCGAACACACATATTGCAACTGAATCGATTTCCAACGAAACAGCAGCCTAACAAATACGTGTAG 1995 49.02 MVAAISGAASAHSPTPKISTNQRHEHQQDHLRNQARPPLLPSEKDNGVLNRKPRGRQVPSRYMSPSPSTSTSTSSTTSSSASSRRFPSPLLSRSTNLTPASTPLPSLGPKRSQSVDRRRPTAPRSMTPVIESRHGNATEAAKLLVTSTRSLSVSFQGEAFSLPISKTKATSTPSLSNARKGSTPERRRATPLRDKSDGSGVQVENSKLLDQHRWPARNRHANLEGNPLSRSLDCSGEQKKVNGIGSGMVVRGLQQTMLDDSRRASFDGRLSLDLSSPELLKTVRQSPDADSVNESSVPSDLTTSDTDSVSSGSTSGVQDCGTVAKGRNGPRGIVVSARFWQETNSRLRRLHDPGSPLSTSPGARLGAPSKFNQSKRFSSDGPILSPRTMASPIRGGARPPSPSKLWTSSVSSPSRGISSPSRTRNGVGGSLVSNSISTPSILSFSVDIRRGKMGEDRIVDAHVLRLQHNRYLQWRFVNARADATFMLQRLNAERNVWNAWVTISELRHTVTLKRIKLLLLRQKLKLTSVLKGQISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKSIADIQNLKDAVGSAVDVMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTHILQLNRFPTKQQPNKYV 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11275218 11286825 - CmaCh11G017040.1 Cma11g01704 304213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01704 664 MobiDBLite consensus disorder prediction 282 328 - -
Cma11g01704 664 MobiDBLite consensus disorder prediction 282 321 - -
Cma11g01704 664 Pfam QWRF family 308 625 IPR007573 -
Cma11g01704 664 PANTHER AUGMIN FAMILY MEMBER 41 652 - -
Cma11g01704 664 MobiDBLite consensus disorder prediction 365 385 - -
Cma11g01704 664 PANTHER QWRF MOTIF-CONTAINING PROTEIN 2 41 652 - -
Cma11g01704 664 MobiDBLite consensus disorder prediction 168 204 - -
Cma11g01704 664 MobiDBLite consensus disorder prediction 347 431 - -
Cma11g01704 664 MobiDBLite consensus disorder prediction 61 109 - -
Cma11g01704 664 MobiDBLite consensus disorder prediction 402 431 - -
Cma11g01704 664 MobiDBLite consensus disorder prediction 1 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01704 - - - cmo:103495301 1110.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01704 Cma19g00558 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01704 Cma-Chr11:11275218 Cma12g00849 Cma-Chr12:6296721 6.38E-59 dispersed
Cma20g00560 Cma-Chr20:2712719 Cma11g01704 Cma-Chr11:11275218 4.19E-17 dispersed
Cma11g01704 Cma-Chr11:11275218 Cma12g00592 Cma-Chr12:3090529 3.26E-148 wgd
Cma11g01704 Cma-Chr11:11275218 Cma19g00558 Cma-Chr19:6351182 0 wgd
Cma11g01704 Cma-Chr11:11275218 Cma05g00148 Cma-Chr5:651683 9.80E-145 wgd
Cma11g01704 Cma-Chr11:11275218 Cma09g00280 Cma-Chr9:1147853 3.70E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g691 Blo02g00934 Blo03g00075 Bda06g01204 . Bpe07g00273 . Bma05g00655 . Cmo19g00571 Cmo11g01414 . . . . . Cpe04g00322 Cpe15g00445 . . . . . . . Cla02g00676 Cam02g0709 Cec02g0721 Cco02g0742 Clacu02g0716 Cmu02g0713 Cre02g1027 . . Cone3ag1024 Cone10ag1039 Lsi03g00569 Csa07g00691 . Cme01g00114 . . . . . Bpe05g00476 . . . . . Cma11g01704 Cma19g00558 Car11g01138 Car19g00416 . . . . . . . . . . . . . . . . . . Chy01g00125 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005063 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01704 Cma_Chr11 FPKM 5.608209 7.194292 4.613063 3.655323 11.8861 10.266724 11.286953 5.186453 5.542136 4.82397