Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01710 ATGGCGGATAAGGTTGTTCTTCTCCTCCTCCTCCCCAATCCACCGCCCTCCAAACCCCTCATCCACGTCTTCCACCACCAGCCCCCTTCGCCCTCTTCCCCTTATACAACACTATCCTTTCCTCCGCCGCAGCCGCAGCCGCTCTCTTCCCCATCATCCCCCATAGCCCCTCTTCTCCAAGGCATCCTTCATCCCCACCAAGACCCCTCTTCCCCTCAAACCCATAACCCCCAATCCATTTTCAGAGCACACACCCGGAAAGGCCGATCCCGCGGGAAGCCATGGTCGCACCACCGTCTCTCTACCAAGGAGCTTAATTTCACCCCTGAATCTGTTTCATTCGACATTTTGGGGATAATCAAGGGCTTAGTGTTTCGCAATAAGAATGAAGTAGCCTTGCGTGTTTTTGAATTTTGTCGTAATCGGAAGGAATTTGCATCGATTTTGAATCGCTCTGTCATTGCTGTGATTATTAGTGTTCTTGGTAAACAGGGTCGGGCTTCTTTTGCAGCTTCTTTGCTTCATGAGCTTCGAAATAATGGAGTAAATATTGACATTTATGCTTATACTTCTTTGATAACTACTTATGCTAGCAATGGTAGATATAGAGAGGCTGTGATAGGGTCATTGTATAAAGAAGCAGCAGAGGTGTTTGAAGAAATGAAAGCAGCTGGATTTAGGCCTGATAAGGTTACTTACAATGCGTTGTTGGATGTGTATGGGAAGTCTCGACCACCTAAGGAAGCGATGGAGATTTTGAAGAAGATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTATGAGCGGGACGGTTTTTTAGATGAAGCTACGGAGCTAAAAAGACAGATGATGGAGAAGGGGATTGAGCCTGATGTTTTTACTTACACGACGTTGTTGTTTGGTTTCGAAAAGACGGGAAAGGACAGTTGTGCGATGAGAGTATTTGAAGAGATGAGAGTTGCAGGGTGCCAACCGAATATATGCACATTCAATGTGTTGATTAAGCTGCACGGTAAGAGGGGGAATTTCGCGGAGATGATGAAGGTTTTCGAGGAGATTAAGATGTGGTTCGTTCGACCAAGCCATAGCTATCTATCGAAGAATGTTGGATGCTGGGTTCTCTCCCAATCTGCCGACGTACAATACCGTTTTAGCAGCCTTGGCTCGGGGAGGCCTTTGGGAGCAGTCGGAGATAGTGCTCGCCGAAATGAAGAACGGTCGCGATCTTTTGATGGAGACCGAGCGTGTGCTTTCTTCGAACTTAGGAAGCACGGTTTTTCGCCTGATTTAAGGACTCTAAATGCCATGGTTTCGATCTATGGTAGGAGAAGGATGGTTTCGAAAACGAACGAAATTTTGAACTTCATGAAGGATAGCGGATATACTCCGAGCTTGACTACTTATAATAGCCTAATGTACATGTACAGTCGCTCGGAGAACTTCAACAAGTCGGAGGAGATTCTGAGGGAAATTATTGGGAAAGGAATAAAGCCTGATCTCATTTTGTTTAGTACCGATTTCGAGCTTGTCCTAGATGTAATTACGTATAATACCTTCATTGCAAGCTATGCTGCTGATTCGATATTTGTAGAGGCATTTGATGTCGTGAGCTATATGATCAAGAATGGATGTAAGCTTAATCAAAACACATACAACTCTTTAGTAGACTGGTTTTGTAAGCTAAGTTGCTGGGAGGATGCAAATAGTTTCGTCTCAAACCTCAGCGATCTCGACCCACACATAATGAAGGAAGAGAAAATACAGGTTGCTAGAGCGTATAAGCAAGAAAAGAAATGGTCATTGGCAATGAACAATGCAAGCTTGAGTTGTAGATATGATTAG 1866 44.69 MADKVVLLLLLPNPPPSKPLIHVFHHQPPSPSSPYTTLSFPPPQPQPLSSPSSPIAPLLQGILHPHQDPSSPQTHNPQSIFRAHTRKGRSRGKPWSHHRLSTKELNFTPESVSFDILGIIKGLVFRNKNEVALRVFEFCRNRKEFASILNRSVIAVIISVLGKQGRASFAASLLHELRNNGVNIDIYAYTSLITTYASNGRYREAVIGSLYKEAAEVFEEMKAAGFRPDKVTYNALLDVYGKSRPPKEAMEILKKMESSRFAPSIVTYNSLISAYERDGFLDEATELKRQMMEKGIEPDVFTYTTLLFGFEKTGKDSCAMRVFEEMRVAGCQPNICTFNVLIKLHGKRGNFAEMMKVFEEIKMWFVRPSHSYLSKNVGCWVLSQSADVQYRFSSLGSGRPLGAVGDSARRNEERSRSFDGDRACAFFELRKHGFSPDLRTLNAMVSIYGRRRMVSKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENFNKSEEILREIIGKGIKPDLILFSTDFELVLDVITYNTFIASYAADSIFVEAFDVVSYMIKNGCKLNQNTYNSLVDWFCKLSCWEDANSFVSNLSDLDPHIMKEEKIQVARAYKQEKKWSLAMNNASLSCRYD 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11319149 11321669 - CmaCh11G017100.1 Cma11g01710 304219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01710 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Cma11g01710 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Cma11g01710 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Cma11g01710 621 MobiDBLite consensus disorder prediction 34 52 - -
Cma11g01710 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Cma11g01710 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Cma11g01710 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 518 578 - -
Cma11g01710 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 119 368 - -
Cma11g01710 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 421 513 - -
Cma11g01710 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Cma11g01710 621 TIGRFAM PPR: pentatricopeptide repeat domain 336 368 IPR002885 -
Cma11g01710 621 TIGRFAM PPR: pentatricopeptide repeat domain 522 555 IPR002885 -
Cma11g01710 621 TIGRFAM PPR: pentatricopeptide repeat domain 266 300 IPR002885 -
Cma11g01710 621 TIGRFAM PPR: pentatricopeptide repeat domain 301 335 IPR002885 -
Cma11g01710 621 TIGRFAM PPR: pentatricopeptide repeat domain 475 507 IPR002885 -
Cma11g01710 621 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Cma11g01710 621 TIGRFAM PPR: pentatricopeptide repeat domain 440 472 IPR002885 -
Cma11g01710 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Cma11g01710 621 MobiDBLite consensus disorder prediction 21 78 - -
Cma11g01710 621 Pfam Pentatricopeptide repeat domain 428 483 IPR002885 -
Cma11g01710 621 Pfam Pentatricopeptide repeat domain 287 348 IPR002885 -
Cma11g01710 621 Pfam Pentatricopeptide repeat domain 217 275 IPR002885 -
Cma11g01710 621 Pfam PPR repeat family 520 568 IPR002885 -
Cma11g01710 621 Gene3D Tetratricopeptide repeat domain 514 586 IPR011990 GO:0005515
Cma11g01710 621 Gene3D Tetratricopeptide repeat domain 211 391 IPR011990 GO:0005515
Cma11g01710 621 Pfam PPR repeat 188 206 IPR002885 -
Cma11g01710 621 Gene3D Tetratricopeptide repeat domain 411 513 IPR011990 GO:0005515
Cma11g01710 621 Gene3D Tetratricopeptide repeat domain 96 210 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01710 - - - cmo:103495294 376.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01710 Cma-Chr11:11319149 Cma05g00692 Cma-Chr5:3613553 5.94E-26 dispersed
Cma11g01710 Cma-Chr11:11319149 Cma19g00563 Cma-Chr19:6387625 2.07E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g669 . . . . . . . . . Cmo11g01407 . . . . . Cpe04g00316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma11g01710 . Car11g01132 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009280 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01710 Cma_Chr11 FPKM 0.0 0.0 0.0 0.361516 2.394065 2.357339 2.515358 0.391135 0.256432 0.348045