Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01715 ATGGCAACCTTCACCTCTTCTCTCTCGCTCCCTCTGCAACTCCGACCCTCCTCATCACGCTCTCCTCGCCAATTTTCTTCTCCCCCACCCTCGCTTTCCTTCCCTCTTCTTCGTTCCTCCTCTAAATTCCCCTGCCGATTCTCAGCCCTAACTGTCTCCTCCTCTTTGGACTCCTCCTCCGATGACTTCGATCATGGCAAGCACTCGAATCCGCCATTTTCATCCAAGAAATCAGTTCTCTCATCTTTGATACAAGAGATAGAGCCATTAGATGTAAGCATAATTCAAAAAGATGTTCCACCGACCACTGTGGATGCTATGAAAAGGACTATCTCTGGCATGCTGGGCTTACTTCCATCTGACCAGTTTCAAGTTTTGGTTGAGGCTTTATGGGAACCAGTTTCTAAGTTATTAGTTTCTTCAATAATGACTGGGTACACATTGCGTAATGCTGAATATAGACTCTGCCTTGAAAGAAATCTTGACTTTGATGATGGAAATTACGACAAACAAACAAATGATGATTGTAGAATTGATCTACATGAAATGTTGCTTGACAGTGCTAATTCGGAGAACATTTTAGATGAAAATGAGGTTTCTTCTAAATGCGAGGAATTTTTGGATGAACCGTGTGAAAACCTTAATATTCAAGGCATTGGTGAAACTTCTCCTGAAGTTCAACAGCATATTCTTCATTTAAAGTTTCAATTATCTTCAATTAAAAAGGAACTCCATGAAGTCAAGAGAAAAAGTGCTGCTCTTCAGATGCAGCAGTTTGTTGGCGAGGAGAAAAATGATCTGTTGGACTATCTGCGATCATTACAGCCAGAAAAGGTGGCTGAGCTCTCTGAACCTACATCCCCTGATTTAAAAGAAGCCATACATTCTGTTGTCCACGGACTTCTTGCAACCCTTTCCCCAAAGATTCATTCCAAAGTTCCTCCTCAATCAGAAAATATTGGAACTGGCACGACAGATATTGGTAATGAAGATTGTGCAGAACTCGTTGAGAATACTTCTCTCCAATTCCAGCCCCTCTTAACATTAACACGAGACTATCTGGCTCGTCTGCTTTTCTGGTGTATGCTGTTGGGGCATTACATGAGAGGCCTGGAATACAGGATGGAGCTGATGAACCTTCTTTCCCTTTCAAGCAATGTTGAAAATGCTTCAGGTGGCGTGACCAGTGATGACTTTTCTTCACAGTGCTGA 1212 42.49 MATFTSSLSLPLQLRPSSSRSPRQFSSPPPSLSFPLLRSSSKFPCRFSALTVSSSLDSSSDDFDHGKHSNPPFSSKKSVLSSLIQEIEPLDVSIIQKDVPPTTVDAMKRTISGMLGLLPSDQFQVLVEALWEPVSKLLVSSIMTGYTLRNAEYRLCLERNLDFDDGNYDKQTNDDCRIDLHEMLLDSANSENILDENEVSSKCEEFLDEPCENLNIQGIGETSPEVQQHILHLKFQLSSIKKELHEVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEKVAELSEPTSPDLKEAIHSVVHGLLATLSPKIHSKVPPQSENIGTGTTDIGNEDCAELVENTSLQFQPLLTLTRDYLARLLFWCMLLGHYMRGLEYRMELMNLLSLSSNVENASGGVTSDDFSSQC 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11352331 11357862 - CmaCh11G017150.1 Cma11g01715 304224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01715 403 Coils Coil 237 257 - -
Cma11g01715 403 MobiDBLite consensus disorder prediction 1 32 - -
Cma11g01715 403 PANTHER OS02G0833400 PROTEIN 46 393 - -
Cma11g01715 403 Pfam Protein of unknown function (DUF760) 80 161 IPR008479 -
Cma11g01715 403 Pfam Protein of unknown function (DUF760) 266 381 IPR008479 -
Cma11g01715 403 PANTHER MAR-BINDING FILAMENT-LIKE PROTEIN 46 393 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01715 - - - cmax:111486037 718.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00987 Cma-Chr5:7924148 Cma11g01715 Cma-Chr11:11352331 9.18E-20 dispersed
Cma11g01052 Cma-Chr11:5788779 Cma11g01715 Cma-Chr11:11352331 3.00E-45 dispersed
Cma11g01715 Cma-Chr11:11352331 Cma12g00674 Cma-Chr12:3641188 3.22E-20 dispersed
Cma11g01715 Cma-Chr11:11352331 Cma14g00620 Cma-Chr14:3056340 2.92E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g661 . . . . . Bpe12g00302 . . . Cmo11g01400 . . . . Sed06g0592 Cpe04g00310 . Bhi05g01055 Tan02g0996 Cmetu04g1635 Lac12g0194 . . . Cla02g00660 Cam02g0695 Cec02g0708 Cco02g0727 Clacu02g0701 Cmu02g0699 Cre02g1014 . . . . Lsi03g00555 Csa07g00704 . Cme01g00102 . . Bda15g00839 . . . . Bma08g00458 . . . Cma11g01715 . Car11g01126 . . . . . . . . . . . . . . . . . . . Chy01g00110 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009529 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01715 Cma_Chr11 FPKM 24.493679 22.58996 46.264362 45.385151 26.902205 29.335947 30.922758 62.468117 64.394196 76.863548